Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   ACIO08_RS04125 Genome accession   NZ_CP173233
Coordinates   925517..926284 (-) Length   255 a.a.
NCBI ID   WP_410679013.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 920517..931284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIO08_RS04095 (ACIO08_04095) aroB 920905..921993 (-) 1089 WP_410679008.1 3-dehydroquinate synthase -
  ACIO08_RS04100 (ACIO08_04100) aroK 922010..922570 (-) 561 WP_272487554.1 shikimate kinase AroK -
  ACIO08_RS04105 (ACIO08_04105) comE 922771..924093 (-) 1323 WP_410679009.1 type IV pilus secretin PilQ Machinery gene
  ACIO08_RS04110 (ACIO08_04110) - 924102..924461 (-) 360 WP_017806828.1 hypothetical protein -
  ACIO08_RS04115 (ACIO08_04115) - 924461..925009 (-) 549 WP_410679010.1 hypothetical protein -
  ACIO08_RS04120 (ACIO08_04120) - 924975..925487 (-) 513 WP_410679011.1 PilN domain-containing protein -
  ACIO08_RS04125 (ACIO08_04125) comA 925517..926284 (-) 768 WP_410679013.1 hypothetical protein Machinery gene
  ACIO08_RS04130 (ACIO08_04130) - 926443..928992 (+) 2550 WP_410679014.1 penicillin-binding protein 1A -
  ACIO08_RS04135 (ACIO08_04135) - 929092..930048 (-) 957 WP_410679015.1 alpha-2,3-sialyltransferase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 30403.25 Da        Isoelectric Point: 8.0543

>NTDB_id=957653 ACIO08_RS04125 WP_410679013.1 925517..926284(-) (comA) [Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-2]
MLKRKISCKKQLQIGIWKGIRTCDFVWFDEENRPRFCVIENDISFERLKPNLLVGGCNYSLKTLKFVASITSQYTWIKTL
LLPHSLTISEYEQQCRFLLSQELPIIIDDIWFDYQVEQLKEGVKLTVYAVKKKIAEDYLKIYQPLSIQVLDCISNTVIRA
FHYFIDYKIEKKSLFFYQDEVYVFIINPNTNQIQTIHKTKISLTTLYEKFCQRYSFDCDQVYYYSSLNNTQEYSPDWIRI
NTDIPFIALGNALWK

Nucleotide


Download         Length: 768 bp        

>NTDB_id=957653 ACIO08_RS04125 WP_410679013.1 925517..926284(-) (comA) [Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-2]
ATGTTAAAAAGAAAAATTTCTTGTAAGAAACAGCTGCAAATTGGTATCTGGAAAGGTATCAGAACTTGTGATTTTGTCTG
GTTTGATGAGGAAAATCGTCCTCGCTTTTGTGTAATTGAGAATGATATTTCGTTTGAGCGTTTGAAACCTAATTTGTTAG
TTGGTGGATGTAATTATTCATTAAAAACTTTGAAATTTGTGGCATCTATTACATCGCAATATACTTGGATAAAAACATTG
TTGCTTCCTCATTCTCTAACTATTTCTGAATATGAACAGCAATGCCGTTTCTTATTGTCTCAAGAATTACCTATTATTAT
CGATGATATTTGGTTTGATTATCAAGTAGAACAGCTAAAAGAAGGTGTTAAATTAACTGTGTATGCGGTTAAAAAAAAGA
TAGCCGAAGATTATCTTAAGATATATCAGCCTTTATCTATTCAAGTTTTAGATTGTATCTCAAATACTGTAATTAGAGCG
TTTCATTATTTTATTGATTATAAAATAGAGAAAAAATCACTGTTTTTTTATCAAGATGAAGTCTATGTATTTATTATTAA
TCCTAATACAAATCAAATCCAAACTATACATAAAACAAAGATTTCACTTACCACTTTGTATGAGAAATTTTGTCAACGCT
ATTCATTTGATTGTGATCAAGTTTATTATTATTCTTCGTTAAATAATACACAAGAATATTCTCCAGATTGGATTAGAATA
AATACAGATATTCCATTTATAGCATTAGGAAATGCATTATGGAAGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae 86-028NP

39.442

98.431

0.388
  comA Haemophilus influenzae Rd KW20

39.442

98.431

0.388