Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   ACIO05_RS04820 Genome accession   NZ_CP173232
Coordinates   923300..925381 (+) Length   693 a.a.
NCBI ID   WP_410678904.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 918300..930381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIO05_RS04800 (ACIO05_04800) gapA 918834..919838 (-) 1005 WP_035688995.1 glyceraldehyde-3-phosphate dehydrogenase -
  ACIO05_RS04805 (ACIO05_04805) gmk 920132..920758 (+) 627 WP_410678907.1 guanylate kinase -
  ACIO05_RS04810 (ACIO05_04810) rpoZ 920825..921091 (+) 267 WP_035689000.1 DNA-directed RNA polymerase subunit omega -
  ACIO05_RS04815 (ACIO05_04815) spoT 921164..923287 (+) 2124 WP_410678905.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  ACIO05_RS04820 (ACIO05_04820) recG 923300..925381 (+) 2082 WP_410678904.1 ATP-dependent DNA helicase RecG Machinery gene
  ACIO05_RS04825 (ACIO05_04825) murI 925457..926245 (+) 789 WP_410678902.1 glutamate racemase -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 78046.64 Da        Isoelectric Point: 8.5283

>NTDB_id=957609 ACIO05_RS04820 WP_410678904.1 923300..925381(+) (recG) [Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-3]
MAMDVLGAVPLTILSGVGAAISAKLSRIGINNLQDLLFHLPSRYEDRTRITPIIDLRPEQYATISAVVQLCEVQFGRRPI
LTVVVSDGTSKLTLRFFNFNAAMRNSFQVGTKVKAFGEIKRGRFMAEIHHPEYQILRDDTPLIMAETLTPIYPTTEGLKQ
NSLRKLTDQALALLDKVQLPEILPDEFNPYPYSLKEAIRFLHRPPPDVSLEMLEKGQHPAQVRLIFEELLAHNLAMQKVR
SNIQQFFALPLQYQTDLKSRFLQRLPFSPTNAQRRVVQDIERDLQKPYPMMRLVQGDVGSGKTLVAALAALVAIDNQKQV
ALMAPTEILAEQHFANFQNWFEPLGIKVGWLAGKVKGKARQAVLEQMKAGEVQMIVGTHALFQQDVEFNDLALVIIDEQH
RFGVHQRLMLREKGEKSGNYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAVSEERRGEIVNRVYHACM
NEKRQAYWVCTLIDESEVLEAQAAEAIWEDLSKALPNLCIGLVHGRMKATEKQAIMASFKAAELDVLVATTVIEVGVDVP
NASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMYKPPLGKVSKKRLQVLRESQDGFYISEKDLEIRGPGEVLGTKQ
TGVAEFKVANLMRDRKMIPTVQHYAREMIVKYPQFSEALIQRWLDEKTIYSNA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=957609 ACIO05_RS04820 WP_410678904.1 923300..925381(+) (recG) [Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-3]
ATGGCTATGGACGTTTTAGGTGCAGTTCCCCTCACGATATTATCGGGCGTGGGGGCAGCAATTTCAGCGAAACTCAGCCG
TATTGGGATTAATAATCTGCAAGATCTGCTTTTCCATTTACCGAGCCGTTATGAAGATCGCACAAGAATTACGCCCATTA
TCGATCTTCGCCCCGAACAATATGCCACCATTAGTGCTGTAGTGCAGCTCTGCGAAGTGCAATTTGGCCGCCGCCCGATT
TTAACGGTCGTGGTGTCTGATGGCACATCGAAGCTGACCTTACGTTTTTTCAATTTCAATGCCGCAATGCGAAACAGCTT
TCAAGTGGGAACGAAAGTGAAAGCCTTTGGCGAAATCAAACGAGGTCGCTTTATGGCAGAAATTCATCACCCCGAATATC
AAATTTTGCGTGATGATACCCCCTTGATAATGGCGGAAACCCTCACCCCGATTTATCCCACAACGGAGGGGCTGAAACAA
AATTCCTTGCGAAAGCTCACCGATCAAGCCTTGGCACTGTTAGATAAAGTGCAGCTGCCCGAAATTTTGCCTGATGAATT
TAATCCTTATCCATACAGTTTGAAAGAGGCGATCCGTTTTCTACACCGTCCACCGCCAGATGTGTCGTTGGAAATGTTGG
AAAAAGGGCAACATCCCGCACAAGTGCGGTTAATTTTTGAAGAGTTATTGGCACATAATTTGGCAATGCAAAAAGTGCGG
TCAAATATTCAGCAGTTTTTTGCGCTGCCCTTACAATATCAAACGGATCTCAAATCACGCTTTTTACAGCGTTTACCCTT
CAGCCCCACCAATGCACAACGCCGAGTGGTGCAAGATATTGAGCGGGATTTGCAAAAGCCTTATCCAATGATGCGATTAG
TGCAGGGCGATGTTGGCTCAGGAAAAACCCTTGTTGCCGCGTTGGCTGCCTTGGTGGCGATCGATAATCAAAAGCAGGTG
GCATTAATGGCACCAACAGAAATTTTGGCAGAACAGCATTTTGCCAATTTCCAAAATTGGTTTGAGCCTTTGGGCATCAA
AGTCGGTTGGCTGGCAGGAAAAGTGAAAGGCAAGGCTCGCCAAGCGGTACTTGAACAAATGAAAGCGGGTGAAGTGCAAA
TGATTGTCGGCACGCACGCTCTATTTCAGCAAGATGTGGAATTTAATGATCTAGCCTTAGTGATTATTGATGAACAGCAC
CGATTTGGCGTACATCAACGCTTAATGTTACGCGAAAAAGGCGAAAAATCAGGCAATTACCCTCATCAATTAATTATGAC
CGCCACCCCGATCCCGCGTACCCTAGCAATGACGGTGTATGCGGATTTAGATACATCAATTATTGATGAATTACCACCAG
GCAGAACGCCGATTACCACCGTTGCGGTGTCCGAAGAACGCCGCGGAGAAATTGTAAACCGTGTGTATCACGCCTGTATG
AATGAAAAACGCCAAGCCTATTGGGTGTGTACTTTAATTGACGAAAGCGAGGTCTTGGAGGCACAAGCGGCAGAGGCGAT
ATGGGAAGATCTCAGCAAAGCACTTCCAAACTTATGCATTGGATTAGTACACGGGCGTATGAAAGCGACAGAAAAACAAG
CAATTATGGCGAGTTTCAAAGCCGCCGAGTTAGATGTGTTGGTAGCAACCACCGTGATTGAAGTGGGTGTAGATGTGCCT
AATGCCAGCTTGATGATTATTGAAAATGCCGAACGTTTAGGATTGTCGCAATTACACCAGTTGCGTGGTCGAGTAGGGCG
CGGAAGTACAGCTTCTTTTTGTGTGCTAATGTATAAACCGCCGTTGGGCAAGGTGTCGAAAAAACGCTTGCAAGTATTGC
GTGAAAGCCAAGACGGCTTCTATATTTCGGAAAAAGATCTGGAAATTCGTGGGCCGGGGGAAGTGTTAGGCACAAAACAA
ACGGGCGTTGCCGAATTTAAAGTGGCGAATTTAATGCGAGATCGCAAAATGATCCCAACTGTACAGCATTATGCTAGAGA
AATGATCGTGAAATATCCCCAATTCTCTGAAGCTTTAATTCAGCGTTGGCTTGATGAGAAAACTATTTATTCCAATGCGT
AA

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-677)

DEAD/DEAH box helicase (DEAD)

(291-433)

RecG wedge domain (RecG_wedge)

(15-172)

Helicase conserved C-terminal domain (Helicase_C)

(480-588)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.331

97.114

0.479
  recG/mmsA Streptococcus pneumoniae R6

40.826

94.372

0.385
  recG/mmsA Streptococcus pneumoniae R36A

40.826

94.372

0.385
  recG Bacillus subtilis subsp. subtilis str. 168

38.416

98.413

0.378