Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   ACIO06_RS10050 Genome accession   NZ_CP173230
Coordinates   2006754..2008835 (+) Length   693 a.a.
NCBI ID   WP_410679880.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/GA-USA/20231216/S1-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2001754..2013835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIO06_RS10030 (ACIO06_10030) gapA 2002301..2003305 (-) 1005 WP_035688995.1 glyceraldehyde-3-phosphate dehydrogenase -
  ACIO06_RS10035 (ACIO06_10035) gmk 2003599..2004225 (+) 627 WP_035688997.1 guanylate kinase -
  ACIO06_RS10040 (ACIO06_10040) rpoZ 2004292..2004558 (+) 267 WP_035689000.1 DNA-directed RNA polymerase subunit omega -
  ACIO06_RS10045 (ACIO06_10045) spoT 2004631..2006754 (+) 2124 WP_410679879.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  ACIO06_RS10050 (ACIO06_10050) recG 2006754..2008835 (+) 2082 WP_410679880.1 ATP-dependent DNA helicase RecG Machinery gene
  ACIO06_RS10055 (ACIO06_10055) murI 2008911..2009699 (+) 789 WP_410679881.1 glutamate racemase -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 78034.40 Da        Isoelectric Point: 8.1530

>NTDB_id=957525 ACIO06_RS10050 WP_410679880.1 2006754..2008835(+) (recG) [Avibacterium paragallinarum strain npAP/GA-USA/20231216/S1-2]
MATEILGAVPLTTLSGVGAAVSAKLSRIGINNLQDLLFHLPSRYEDRTRITPIIDLRPEQYATISATVQLCEVQFGRRPI
LTVVVSDGTSKLTLRFFNFNAAMRNNFQVGARVKAFGEVKRGRFMAEMHHPEYQIIRDDAPLVMAETLTPIYPTTEGLKQ
NSLRKLTDQALALLDKIQLPEILPDEFNPYPYSLKEAIRFLHRPPPDVSLEMLEKGQHPAQVRLIFEELLAHNLAMQKVR
SNIQQFFALPLQYQTDLKQQFLQRLPFSPTNAQSRVVQDIEQDLQKPYPMMRLVQGDVGSGKTLVAALAALVAIDNQKQV
ALMAPTEILAEQHFANFQNWFEPLGIKVGWLAGKVKGKARQAVLEQMKASEVQMIVGTHALFQQDVEFNDLALVIIDEQH
RFGVHQRLMLREKGEKSGNYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAVSEERRGEIVNRVYHACM
NEKRQAYWVCTLIDESEVLEAQAAEAIWEDLSKALPNLRIGLVHGRMKATEKQAIMASFKSAELDVLVATTVIEVGVDVP
NASLMIIENAERLGLSQLHQLRGRVGRGSTASFCVLMYKPPLGKVSKKRLQVLRESQDGFYISEKDLEIRGPGEVLGTKQ
TGVAEFKVANLMRDRKMIPTVQHYAREMIVKYPQFSEALIQRWLDEKTIYSNA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=957525 ACIO06_RS10050 WP_410679880.1 2006754..2008835(+) (recG) [Avibacterium paragallinarum strain npAP/GA-USA/20231216/S1-2]
ATGGCTACGGAAATTCTTGGTGCAGTTCCGCTGACCACACTTTCTGGTGTAGGCGCAGCGGTTTCGGCAAAACTGAGCCG
AATTGGCATTAATAATCTGCAAGATTTGCTTTTTCATCTGCCTAGCCGTTATGAAGACCGTACAAGAATTACGCCCATAA
TCGATCTTCGCCCTGAACAATATGCCACAATTAGCGCAACGGTTCAGCTTTGCGAAGTGCAATTTGGACGCCGTCCAATT
TTAACTGTAGTAGTGTCGGACGGCACATCAAAATTAACCTTACGTTTTTTCAATTTTAATGCGGCAATGCGAAATAACTT
CCAAGTAGGCGCCCGAGTCAAAGCCTTTGGCGAAGTGAAGCGCGGTCGTTTTATGGCGGAAATGCATCACCCCGAATATC
AAATTATTCGTGATGATGCCCCTTTGGTAATGGCTGAAACTCTGACGCCAATTTATCCTACCACAGAAGGCTTAAAGCAA
AATTCTTTACGCAAATTAACGGATCAAGCACTGGCTTTACTTGATAAAATTCAGTTGCCAGAAATTCTGCCTGATGAATT
TAACCCTTATCCTTATAGCCTAAAAGAGGCGATCCGATTTTTGCACCGCCCACCGCCGGATGTTTCTTTAGAAATGTTGG
AAAAAGGACAGCACCCTGCGCAAGTGCGGTTAATTTTTGAAGAATTATTAGCGCATAATTTAGCAATGCAAAAAGTGCGG
TCAAATATTCAACAATTTTTTGCCTTGCCATTGCAGTATCAAACCGATCTAAAACAGCAATTTTTACAGCGTTTGCCATT
TAGCCCGACTAATGCGCAAAGCCGCGTTGTGCAGGATATTGAGCAAGATCTGCAAAAGCCTTATCCAATGATGCGATTAG
TGCAGGGCGATGTGGGATCGGGGAAAACCTTGGTCGCGGCATTAGCTGCACTGGTAGCAATTGACAATCAAAAGCAAGTG
GCACTTATGGCGCCGACAGAAATTTTGGCGGAACAGCATTTTGCCAATTTCCAAAATTGGTTTGAGCCTTTGGGCATCAA
AGTCGGTTGGCTGGCAGGAAAAGTGAAAGGCAAGGCTCGCCAAGCGGTACTTGAACAAATGAAAGCGAGTGAAGTGCAAA
TGATTGTCGGCACGCACGCTCTATTTCAGCAAGATGTGGAATTTAATGATCTCGCCTTAGTGATTATTGATGAACAGCAC
CGATTTGGCGTACATCAACGCTTAATGTTACGCGAAAAAGGCGAAAAATCAGGCAATTACCCTCATCAATTAATTATGAC
CGCCACCCCGATCCCGCGTACCCTAGCAATGACGGTGTATGCGGATTTAGATACATCAATTATTGATGAATTACCACCAG
GCAGAACGCCGATTACCACCGTTGCGGTGTCCGAAGAACGCCGCGGAGAAATTGTAAACCGTGTGTATCACGCCTGTATG
AATGAAAAACGCCAAGCCTATTGGGTGTGTACTTTAATTGACGAAAGCGAGGTCTTGGAGGCACAAGCGGCAGAGGCGAT
ATGGGAAGATCTCAGTAAAGCACTTCCAAACTTACGCATCGGATTAGTACACGGGCGTATGAAAGCGACAGAAAAACAAG
CAATTATGGCGAGTTTCAAATCCGCCGAGTTAGATGTGTTGGTGGCAACCACGGTAATTGAAGTAGGAGTGGACGTGCCG
AATGCCAGCTTGATGATTATTGAAAATGCCGAACGGCTTGGTTTATCTCAGCTTCACCAATTGCGTGGTCGTGTAGGGCG
TGGTAGCACCGCTTCTTTCTGCGTGTTAATGTATAAACCGCCACTGGGTAAGGTGTCGAAAAAACGTTTGCAAGTGCTGC
GTGAGAGCCAAGATGGATTTTATATTTCAGAAAAAGATCTGGAAATTCGCGGGCCAGGTGAAGTGTTAGGCACAAAACAA
ACGGGCGTTGCCGAATTTAAAGTGGCGAATTTAATGCGAGATCGCAAAATGATCCCAACTGTACAGCATTATGCTAGAGA
AATGATCGTGAAATATCCCCAATTCTCCGAAGCTTTAATTCAGCGTTGGCTTGATGAGAAAACCATTTATTCCAATGCGT
AA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(290-433)

RecG wedge domain (RecG_wedge)

(15-172)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-677)

Helicase conserved C-terminal domain (Helicase_C)

(480-588)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.926

97.403

0.486
  recG/mmsA Streptococcus pneumoniae R6

40.826

94.372

0.385
  recG/mmsA Streptococcus pneumoniae R36A

40.826

94.372

0.385
  recG Bacillus subtilis subsp. subtilis str. 168

38.336

97.114

0.372