Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   ACIVIR_RS04475 Genome accession   NZ_CP173225
Coordinates   851357..852406 (+) Length   349 a.a.
NCBI ID   WP_050221199.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 262     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 846357..857406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIVIR_RS04450 - 847580..847936 (+) 357 WP_000114433.1 hypothetical protein -
  ACIVIR_RS04455 dnaJ 848338..849474 (+) 1137 WP_050073039.1 molecular chaperone DnaJ -
  ACIVIR_RS04460 - 849854..850141 (-) 288 WP_000777760.1 hypothetical protein -
  ACIVIR_RS04465 - 850151..850561 (-) 411 WP_001278301.1 HIT family protein -
  ACIVIR_RS04470 pptA 850629..851360 (+) 732 WP_050221198.1 ABC transporter ATP-binding protein Regulator
  ACIVIR_RS04475 pptB 851357..852406 (+) 1050 WP_050221199.1 ABC transporter permease Regulator
  ACIVIR_RS04480 - 852468..852797 (-) 330 WP_000132585.1 hypothetical protein -
  ACIVIR_RS04485 comE/blpR 853093..853830 (+) 738 WP_050221200.1 LytTR family DNA-binding domain-containing protein Regulator
  ACIVIR_RS04490 - 853844..855193 (+) 1350 WP_050221201.1 sensor histidine kinase -
  ACIVIR_RS04495 - 855427..855618 (+) 192 WP_376738204.1 hypothetical protein -
  ACIVIR_RS04500 - 855819..855983 (+) 165 WP_049511538.1 hypothetical protein -
  ACIVIR_RS04505 - 855980..856384 (+) 405 WP_050221203.1 hypothetical protein -
  ACIVIR_RS04510 - 856655..856931 (+) 277 Protein_845 immunity protein -
  ACIVIR_RS04515 - 857014..857397 (+) 384 WP_050221205.1 hypothetical protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40628.78 Da        Isoelectric Point: 9.9405

>NTDB_id=957239 ACIVIR_RS04475 WP_050221199.1 851357..852406(+) (pptB) [Streptococcus pneumoniae strain 262]
MKDLFLKRKQAFRKECLCYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQHFPENHWPILLFVGITSVLLLLWGGIATYMEA
PDKLFLLVGEEEIKLHLKRQTGISLVFWIFVQTLFLLLFAPLFLAMGYGLPVFLLYVLLLGVGKYFHFRQKASKFFTETG
LDWDYVISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKAVQKVPGKIWQNLYLRSYLRNGDLFALSLRLLLLS
LLAQVFIEQAWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQEVVRGLISFVLLVELVVGLITFQE
KLALLALLGAGLVLLVLYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=957239 ACIVIR_RS04475 WP_050221199.1 851357..852406(+) (pptB) [Streptococcus pneumoniae strain 262]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCCTTTCGTAAGGAGTGTCTTTGTTATCTGCGCTATGTGCTCAATGACCA
CTTTGTCTTGTTCCTGCTTGTCCTGTTGGGCTTTCTAGCCTACCAGTACAGTCAACTCTTACAACATTTTCCTGAAAATC
ATTGGCCTATCCTTTTGTTTGTAGGAATTACGTCTGTTTTACTTTTACTTTGGGGAGGAATTGCCACCTATATGGAGGCT
CCAGACAAGCTCTTTCTCTTAGTTGGAGAAGAGGAAATCAAGCTCCATCTCAAGCGTCAAACCGGCATTTCCCTAGTCTT
TTGGATTTTTGTTCAGACCCTCTTCTTGCTGTTATTTGCGCCTTTATTTTTAGCAATGGGTTATGGCTTGCCAGTTTTTC
TGCTATATGTGCTTTTATTGGGGGTAGGAAAATATTTCCACTTTCGTCAAAAGGCCAGCAAATTTTTTACTGAAACTGGA
CTGGACTGGGACTATGTTATTTCTCAAGAAAGCAAGCGTAAGCAAGTCTTGCTTCGTTTCTTTGCCCTCTTTACGCAGGT
CAAGGGAATTTCAAACAGCGTTAAGCGTCGTGCCTATCTGGACTTTATCTTAAAGGCTGTTCAGAAGGTGCCTGGAAAGA
TTTGGCAAAATCTCTATCTGCGTTCTTATCTGCGAAATGGCGACCTCTTTGCTCTCAGTCTTCGTCTTCTCTTGCTTTCC
TTGCTGGCGCAGGTTTTTATCGAGCAAGCTTGGATTGCGACAGCAGTGGTAGTTCTCTTTAACTACCTCTTGCTCTTCCA
GTTGCTGGCCCTCTATCATGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCGCTGGACAAGGGGCAAAAGGAAAAAG
GCTTACAGGAGGTAGTTCGAGGATTGATCAGTTTTGTTTTACTTGTGGAATTAGTTGTTGGGCTGATTACCTTCCAAGAA
AAACTAGCCCTTCTAGCCTTACTAGGAGCTGGTTTGGTTTTACTAGTCTTGTATTTGCCTTATCAGGTAAAACGTCAGAT
GCAGGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.714

100

0.479

  pptB Streptococcus thermophilus LMD-9

46.857

100

0.47