Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   ACIFYW_RS00950 Genome accession   NZ_CP173026
Coordinates   198443..200521 (-) Length   692 a.a.
NCBI ID   WP_001913574.1    Uniprot ID   -
Organism   Vibrio cholerae strain SPH 24-01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 193443..205521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIFYW_RS00935 (ACIFYW_00935) ompR 194566..195288 (+) 723 WP_000230023.1 two-component system response regulator OmpR -
  ACIFYW_RS00940 (ACIFYW_00940) envZ 195357..196673 (+) 1317 WP_088127892.1 two-component system sensor histidine kinase EnvZ -
  ACIFYW_RS00945 (ACIFYW_00945) - 196698..198098 (-) 1401 WP_071188131.1 uracil-xanthine permease family protein -
  ACIFYW_RS00950 (ACIFYW_00950) recG 198443..200521 (-) 2079 WP_001913574.1 ATP-dependent DNA helicase RecG Machinery gene
  ACIFYW_RS00955 (ACIFYW_00955) spoT 200639..202756 (-) 2118 WP_404272685.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  ACIFYW_RS00960 (ACIFYW_00960) rpoZ 202788..203060 (-) 273 WP_000135052.1 DNA-directed RNA polymerase subunit omega -
  ACIFYW_RS00965 (ACIFYW_00965) gmk 203168..203791 (-) 624 WP_000515793.1 guanylate kinase -
  ACIFYW_RS00970 (ACIFYW_00970) - 204159..204830 (+) 672 WP_001015358.1 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter -

Sequence

Protein


Download         Length: 692 a.a.        Molecular weight: 76940.15 Da        Isoelectric Point: 7.3973

>NTDB_id=956735 ACIFYW_RS00950 WP_001913574.1 198443..200521(-) (recG) [Vibrio cholerae strain SPH 24-01]
MSQLLSAVPLCELSGVGAKVAEKLEKVGLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAAVQGKVMAVDTLFGKRKML
TVKISDGNGTLTLRFFNFTAAMKNNFAEGKFVHAYGEIKRGNQGLEIIHPDYKFFAPAQTPDVEPNLTPVYPTTEGLRQL
TLRNLTDQALALLEKSAVQELLPSGLYDQQMTLAQALKIIHRPSAEIDLRLFEQGRHPAQVRLIMEELLAQNLSMLAIRS
QGQQDVALPLAPVHQLKQQLLAQLPFTPTKAQQRVVAEIEADLEKPHPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQVA
LMAPTELLAEQHSLNFAQWLEPMGIQVGWLAGKLKGKARETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHR
FGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDEIVERIRHACLN
EGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQTVMQAFKNNELHLLVATTVIEVGVDVPN
ASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLFHAPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQT
GLADFKIADLVRDQQLVPQVQRIARHIHERYPQNAQAIIDRWLGECDIYAKA

Nucleotide


Download         Length: 2079 bp        

>NTDB_id=956735 ACIFYW_RS00950 WP_001913574.1 198443..200521(-) (recG) [Vibrio cholerae strain SPH 24-01]
ATGTCACAACTCCTTTCAGCCGTTCCTCTTTGTGAACTCTCCGGTGTCGGGGCCAAAGTCGCCGAAAAACTGGAGAAAGT
CGGTTTGCACACCGTGCAGGATCTGCTGTTTCATCTTCCGCTACGTTATGAAGATCGCACTCGCGTTTATCCGATAGTGC
AACTGCACCACGGTTTATGGGCCGCGGTACAAGGCAAAGTGATGGCAGTGGATACCCTGTTTGGCAAACGCAAAATGCTC
ACCGTGAAAATCAGTGATGGCAACGGTACACTGACACTGCGTTTTTTTAACTTCACCGCGGCGATGAAAAACAACTTTGC
GGAAGGCAAATTTGTGCATGCCTATGGGGAGATCAAACGCGGTAATCAAGGCTTAGAGATCATCCATCCTGACTACAAAT
TCTTTGCCCCTGCACAAACGCCCGATGTTGAGCCAAACCTGACTCCGGTTTACCCAACCACTGAAGGACTGCGCCAACTC
ACCCTGCGTAATTTGACTGACCAAGCGTTGGCGCTACTGGAAAAATCCGCGGTGCAGGAGTTACTGCCATCCGGACTTTA
CGATCAGCAGATGACCTTAGCCCAAGCGCTGAAAATCATTCATCGCCCATCGGCGGAGATCGATTTACGTCTGTTTGAAC
AAGGGCGACATCCGGCGCAAGTTCGGCTGATCATGGAAGAACTGCTAGCACAGAATCTCTCGATGCTTGCGATTCGCAGC
CAAGGCCAGCAAGATGTGGCCTTGCCACTGGCACCCGTCCACCAACTCAAACAACAACTCTTGGCACAGCTGCCTTTTAC
GCCGACTAAGGCGCAGCAACGTGTGGTTGCCGAAATCGAAGCGGATTTAGAAAAACCACATCCAATGATGCGCTTAGTGC
AAGGCGATGTGGGCTCAGGCAAAACCTTAGTCGCAGCGCTTGCGGCAGTGCGGGCGATTGAGCATGGCTATCAAGTCGCC
TTGATGGCTCCCACCGAGCTACTGGCCGAGCAGCACTCGCTCAATTTTGCGCAGTGGCTGGAACCTATGGGCATTCAAGT
CGGCTGGCTCGCGGGTAAGCTTAAAGGCAAAGCACGTGAAACGGAACTGGCACGCATCGCCAGTGGCGAAGTGAAAATGG
TGGTCGGCACCCATGCACTGTTTCAAGAGCAAGTATCGTTTGACCATCTAGCCTTGGTGATTATTGATGAGCAGCATCGC
TTCGGGGTGCATCAGCGTTTAGAGCTGCGCGAGAAAGGCGCGAAACAAGGCGCGTATCCGCATCAGCTCATCATGACTGC
TACTCCGATCCCGCGTACTTTGGCGATGACGGCTTATGCCGATTTGGAAACCTCAGTGATTGATGAGTTACCCCCCGGGC
GTACTCCGATTCAAACCGTAGCGATTCCGGATACCAAACGCGATGAGATTGTCGAGCGCATTCGCCACGCCTGCCTCAAC
GAAGGCAAGCAAGCGTATTGGGTGTGTACTTTGATTGATGAATCCGAAGTGCTGGAAGCGCAAGCGGCCGCAGAAACGGC
CGAGGAACTGCAACGTAAACTGCCCGAAGTCAAAATCGGCTTAGTGCATGGCCGGATGAAACCCGCCGAAAAACAAACGG
TAATGCAAGCGTTTAAAAACAATGAGCTGCATCTGCTCGTCGCCACTACAGTGATTGAAGTGGGCGTGGATGTGCCCAAT
GCCAGCTTGATGATCATTGAAAACCCCGAACGTTTGGGGCTGGCTCAACTACACCAGCTACGCGGGCGTGTTGGGCGTGG
TACCGTAGCCAGCCATTGTGTGCTGCTGTTTCATGCACCACTCTCCAAAACCGCGCAAAAGCGTTTAGGCGTTTTGCGTG
AAAGCAACGATGGATTTGTCATCGCGCAGCGCGACTTGGAAATTCGCGGCCCCGGAGAGCTATTAGGCACCAAACAAACC
GGCTTAGCCGATTTCAAAATTGCCGATCTGGTACGCGATCAGCAATTGGTTCCGCAAGTGCAACGCATCGCGCGACATAT
CCATGAACGCTACCCACAAAATGCACAAGCTATCATCGACCGCTGGTTAGGTGAGTGTGATATTTACGCCAAAGCTTAG

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(616-674)

DEAD/DEAH box helicase (DEAD)

(271-432)

Helicase conserved C-terminal domain (Helicase_C)

(479-587)

RecG wedge domain (RecG_wedge)

(15-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

50.595

97.11

0.491
  recG/mmsA Streptococcus pneumoniae R6

39.701

96.821

0.384
  recG/mmsA Streptococcus pneumoniae R36A

39.701

96.821

0.384
  recG Bacillus subtilis subsp. subtilis str. 168

39.324

94.075

0.37