Detailed information NTG0955451

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: WHX55_RS23560
• Genome accession: NZ_CP148752
• Coordinates: 5205710..5207944 (-)
• Length: 744 a.a.
• NCBI ID: WP_353741424.1
• Uniprot ID: -
• Organism: Pseudomonas fluorescens strain AB1
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5200710..5212944

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WHX55_RS23525 (WHX55_23505)	murB	5201091..5202110 (-)	1020	WP_353741420.1	UDP-N-acetylmuramate dehydrogenase	-
WHX55_RS23530 (WHX55_23510)	-	5202107..5202571 (-)	465	WP_353741421.1	low molecular weight protein-tyrosine-phosphatase	-
WHX55_RS23535 (WHX55_23515)	kdsB	5202571..5203335 (-)	765	WP_353741422.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
WHX55_RS23540 (WHX55_23520)	-	5203332..5203517 (-)	186	WP_003179363.1	Trm112 family protein	-
WHX55_RS23545 (WHX55_23525)	lpxK	5203541..5204551 (-)	1011	WP_353741423.1	tetraacyldisaccharide 4'-kinase	-
WHX55_RS23550 (WHX55_23530)	-	5204551..5204979 (-)	429	WP_150726177.1	biopolymer transporter ExbD	-
WHX55_RS23555 (WHX55_23535)	exbB	5204976..5205611 (-)	636	WP_150754005.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
WHX55_RS23560 (WHX55_23540)	comA	5205710..5207944 (-)	2235	WP_353741424.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
WHX55_RS23565 (WHX55_23545)	-	5208080..5208595 (+)	516	WP_150726174.1	DUF2062 domain-containing protein	-
WHX55_RS23570 (WHX55_23550)	-	5208766..5209545 (-)	780	WP_046037490.1	ABC transporter permease	-
WHX55_RS23575 (WHX55_23555)	-	5209542..5210474 (-)	933	WP_008054108.1	ABC transporter ATP-binding protein	-
WHX55_RS23580 (WHX55_23560)	-	5210607..5211230 (-)	624	WP_353741425.1	glutathione S-transferase	-
WHX55_RS23585 (WHX55_23565)	-	5211274..5211933 (-)	660	WP_150758376.1	transglutaminase family protein	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81994.36 Da
• Isoelectric Point: 9.9268

>NTDB_id=955451 WHX55_RS23560 WP_353741424.1 5205710..5207944(-) (comA) [Pseudomonas fluorescens strain AB1]
MRTGMMALALGLLTLRFLPALPPVWLWLAMPVAGLMLLPFRTYPVAFYLFGLSWACANAQWALDDRLPPTLDGETRWVEG
RVTGLPRHDDGVVRFELTDIQSRRTRLPRQMRLAWYGGPPVNSGERWRLAVKLKRPVGLLNPQAFDYQAWLLAQHIGATG
TVKQGERLAPAQWAWRDAIRQRLLAVDAQGRSGALTALVLGDGAGLSREDWQVLQDTGTVHLLVISGQHIGLLAGVVYLL
IAGLARLGLWPSRLPWLPWACGLAFAAALGYGMLAGFEVPVRRACLMIAMVLLWRLRFRHLGAWWPLLLALSGILLLEPL
ASLQPGFWLSFAAVAVLILTFGGRLGPWRWWQTWTRAQWLIAIGLCPLLLVLGLPISLSGPLANLFAVPWISLVVLPPAL
LGTLLLPVPYVGEKLLWLAGGLIDGWFRGLGLVSGQVPAWVPAAVPLWAWVIGAIGAFLLLLPRGLPMRPLGWPMLLMLV
FAPRPMLQEGMAEVWQLDVGQGLAILVRTRHHTLLYDAGPRFGELDQGERVVLPALRKLGVKGLDLMLISHVHADHAGGA
PAIARGLPVKQVVSGEPSDLPAQLQAESCESGRQWTWDEVDFQLWHWPLAGDSNQNSCVLLIEANGERMLLSGDIDAAAE
RALLDSPLALPTDWLQAPHHGSRSSSSNALLDVLQPKGALISRGQGNSFGHPHATVIARYQKRGMAIYDSVEQGAIRLQL
GRFEPPWSMRQERRFWRDPPPFNP

Nucleotide

• Length: 2235 bp

>NTDB_id=955451 WHX55_RS23560 WP_353741424.1 5205710..5207944(-) (comA) [Pseudomonas fluorescens strain AB1]
ATGCGCACAGGGATGATGGCGCTGGCGTTGGGTCTGTTGACCTTGCGTTTTTTACCGGCATTACCGCCGGTCTGGTTGTG
GCTGGCGATGCCGGTGGCGGGTTTGATGTTGCTGCCGTTCAGGACCTATCCGGTGGCGTTTTACCTGTTCGGTTTGAGTT
GGGCCTGCGCGAATGCGCAGTGGGCGCTGGATGACCGATTGCCGCCGACGCTGGACGGAGAAACCCGTTGGGTCGAAGGG
CGGGTCACAGGCTTGCCTCGGCATGACGACGGTGTCGTGCGTTTCGAATTGACCGACATCCAGTCCCGACGTACCCGGCT
GCCGCGGCAAATGCGTCTGGCCTGGTATGGCGGGCCGCCGGTGAACAGTGGCGAACGCTGGCGCCTGGCAGTCAAGTTGA
AGCGCCCGGTCGGGCTCCTCAATCCGCAGGCCTTCGACTACCAGGCCTGGTTGCTGGCACAACACATCGGGGCGACCGGG
ACGGTCAAGCAGGGCGAACGCCTTGCGCCAGCCCAATGGGCCTGGCGTGATGCAATCCGTCAGCGTTTGCTGGCGGTGGA
TGCCCAAGGGCGAAGCGGCGCGTTGACGGCGTTGGTGCTCGGGGACGGCGCCGGGCTGAGTCGCGAAGACTGGCAGGTAT
TGCAGGACACCGGCACGGTGCATCTGTTGGTGATTTCCGGGCAGCACATCGGATTGCTGGCGGGCGTCGTGTATCTGCTG
ATCGCTGGCCTGGCCCGCTTGGGGCTATGGCCGAGTCGTCTGCCATGGTTGCCCTGGGCGTGTGGCCTGGCATTCGCCGC
TGCGCTCGGTTACGGGATGCTGGCCGGTTTCGAGGTGCCGGTACGACGGGCCTGCCTGATGATTGCAATGGTGTTGTTGT
GGCGTCTACGGTTCCGTCATCTCGGTGCATGGTGGCCACTGTTGTTGGCACTCAGCGGCATTTTGCTGCTGGAGCCGCTG
GCGAGTCTTCAACCTGGGTTCTGGCTGTCTTTCGCGGCCGTGGCAGTCTTGATATTGACCTTCGGCGGACGTTTGGGGCC
TTGGCGTTGGTGGCAGACCTGGACCCGTGCCCAGTGGCTGATTGCAATCGGGCTGTGCCCATTGTTACTGGTTCTGGGGT
TACCGATCAGTCTCAGCGGGCCGCTGGCCAATTTGTTCGCGGTGCCCTGGATCAGTCTGGTGGTACTGCCACCGGCCTTG
CTCGGGACGCTGTTGCTGCCGGTGCCTTACGTGGGTGAGAAATTGCTGTGGCTGGCGGGCGGCCTGATCGACGGGTGGTT
CAGGGGATTGGGGCTCGTCTCCGGTCAGGTTCCCGCGTGGGTGCCCGCGGCAGTCCCGCTATGGGCCTGGGTAATCGGTG
CCATTGGCGCCTTCTTGCTATTGCTGCCGCGAGGCTTACCAATGCGCCCGTTAGGGTGGCCCATGCTGTTGATGCTGGTT
TTTGCGCCCAGGCCGATGTTGCAGGAGGGCATGGCCGAAGTCTGGCAACTGGATGTCGGACAGGGCCTGGCGATCCTGGT
GCGCACTCGGCATCACACGTTGCTTTATGACGCCGGACCGCGTTTCGGTGAACTCGACCAAGGGGAACGGGTGGTGCTGC
CAGCATTGCGCAAACTTGGGGTGAAGGGGCTCGACCTGATGCTGATCAGCCACGTCCATGCCGATCATGCCGGCGGTGCC
CCGGCGATTGCCAGGGGCTTGCCGGTGAAACAGGTAGTCAGTGGTGAACCGTCAGACTTGCCTGCGCAATTGCAGGCCGA
GAGCTGTGAGAGCGGCCGGCAATGGACCTGGGATGAAGTTGATTTCCAGCTTTGGCACTGGCCGTTGGCCGGCGACAGCA
ACCAGAACTCCTGTGTCTTGCTGATCGAGGCCAATGGCGAACGGATGCTGTTGAGTGGCGACATCGATGCCGCCGCCGAG
AGAGCCCTGCTGGACAGTCCGTTGGCCCTGCCCACCGATTGGCTGCAGGCGCCACACCACGGCAGTCGCAGTTCGTCATC
CAATGCCCTATTGGATGTCCTGCAACCTAAAGGTGCGCTGATCTCCCGCGGGCAGGGCAATTCGTTTGGCCATCCGCATG
CGACGGTCATCGCGCGGTATCAAAAACGTGGGATGGCGATCTACGACAGCGTCGAACAGGGTGCCATTCGTCTGCAACTG
GGACGCTTCGAGCCGCCGTGGTCAATGCGCCAGGAACGGCGTTTCTGGCGCGATCCGCCGCCCTTCAACCCATAA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-682)

• Domain of unknown function (DUF4131) (DUF4131) (23-167)

• Competence protein (Competence) (198-464)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	63.394	95.833	0.608
comA	Ralstonia pseudosolanacearum GMI1000	33.415	100	0.366