Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   WHX55_RS23555 Genome accession   NZ_CP148752
Coordinates   5204976..5205611 (-) Length   211 a.a.
NCBI ID   WP_150754005.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain AB1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5199976..5210611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHX55_RS23520 (WHX55_23500) - 5200379..5200849 (-) 471 WP_353741419.1 (2Fe-2S)-binding protein -
  WHX55_RS23525 (WHX55_23505) murB 5201091..5202110 (-) 1020 WP_353741420.1 UDP-N-acetylmuramate dehydrogenase -
  WHX55_RS23530 (WHX55_23510) - 5202107..5202571 (-) 465 WP_353741421.1 low molecular weight protein-tyrosine-phosphatase -
  WHX55_RS23535 (WHX55_23515) kdsB 5202571..5203335 (-) 765 WP_353741422.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  WHX55_RS23540 (WHX55_23520) - 5203332..5203517 (-) 186 WP_003179363.1 Trm112 family protein -
  WHX55_RS23545 (WHX55_23525) lpxK 5203541..5204551 (-) 1011 WP_353741423.1 tetraacyldisaccharide 4'-kinase -
  WHX55_RS23550 (WHX55_23530) - 5204551..5204979 (-) 429 WP_150726177.1 biopolymer transporter ExbD -
  WHX55_RS23555 (WHX55_23535) exbB 5204976..5205611 (-) 636 WP_150754005.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  WHX55_RS23560 (WHX55_23540) comA 5205710..5207944 (-) 2235 WP_353741424.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  WHX55_RS23565 (WHX55_23545) - 5208080..5208595 (+) 516 WP_150726174.1 DUF2062 domain-containing protein -
  WHX55_RS23570 (WHX55_23550) - 5208766..5209545 (-) 780 WP_046037490.1 ABC transporter permease -
  WHX55_RS23575 (WHX55_23555) - 5209542..5210474 (-) 933 WP_008054108.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22956.08 Da        Isoelectric Point: 7.3617

>NTDB_id=955450 WHX55_RS23555 WP_150754005.1 5204976..5205611(-) (exbB) [Pseudomonas fluorescens strain AB1]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SRHGREIMKECIEEAAQRVIHELERYVAALGTIAAMAPLLGLLGTVLGMIDIFSAFTGNGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLTGSKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=955450 WHX55_RS23555 WP_150754005.1 5204976..5205611(-) (exbB) [Pseudomonas fluorescens strain AB1]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCGATCGTCGC
CGAACGCCTCTGGACCCTGCGAGCCAGCCGCGTGACCCCGGAGCACTTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AACAGCTCAATAAGGAAAAACTCAAGGAACTGCGCGCCAATTCGCCTTTGGGCGAGATCCTGGCGGCCGGCCTGGCCAAC
TCCAGGCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGAGGCTGCACAACGAGTCATCCATGAGCTCGAACGCTACGT
CGCCGCCCTGGGCACCATCGCCGCCATGGCGCCGTTGCTGGGCCTGTTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GCGCGTTCACAGGCAATGGCATGACCACCAACGCCTCGGTACTGGCCGGTGGTATTTCCAAGGCCCTGATCACCACGGCA
GCGGGCCTGATGGTGGGTATCCCCGCGGTGTTCTTCCACCGTTTCCTGCAACGCCGGATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAGCTGGTCGAAGTGGTGCAGGGCGATCGCGATGTGGACCTGACCGGGAGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829