Detailed information    

insolico Bioinformatically predicted

Overview


Name   recG   Type   Machinery gene
Locus tag   ACFELC_RS28875 Genome accession   NZ_CP172849
Coordinates   6195710..6197785 (+) Length   691 a.a.
NCBI ID   WP_003096624.1    Uniprot ID   A0A0H2ZJ60
Organism   Pseudomonas aeruginosa strain 238641E_ID020     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 6190710..6202785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFELC_RS28845 (ACFELC_28845) - 6191132..6191512 (+) 381 WP_003096609.1 RidA family protein -
  ACFELC_RS28850 (ACFELC_28850) - 6191567..6192298 (+) 732 WP_003096611.1 hypothetical protein -
  ACFELC_RS28855 (ACFELC_28855) - 6192305..6192925 (-) 621 WP_400564830.1 LysE family translocator -
  ACFELC_RS28860 (ACFELC_28860) - 6192992..6193792 (-) 801 WP_400564832.1 AraC family transcriptional regulator -
  ACFELC_RS28865 (ACFELC_28865) - 6193792..6194643 (-) 852 WP_058178513.1 SDR family oxidoreductase -
  ACFELC_RS28870 (ACFELC_28870) oxyR 6194781..6195713 (+) 933 WP_003096622.1 oxidative stress transcriptional regulator OxyR -
  ACFELC_RS28875 (ACFELC_28875) recG 6195710..6197785 (+) 2076 WP_003096624.1 ATP-dependent DNA helicase RecG Machinery gene
  ACFELC_RS28880 (ACFELC_28880) - 6197875..6199284 (+) 1410 WP_003098324.1 HDOD domain-containing protein -
  ACFELC_RS28885 (ACFELC_28885) - 6199356..6199748 (-) 393 WP_400564834.1 helicase -
  ACFELC_RS28890 (ACFELC_28890) - 6199884..6200156 (-) 273 WP_003096630.1 HU family DNA-binding protein -
  ACFELC_RS28895 (ACFELC_28895) alkT 6200358..6201512 (-) 1155 WP_003098326.1 rubredoxin-NAD(+) reductase AlkT -
  ACFELC_RS28900 (ACFELC_28900) - 6201564..6201731 (-) 168 WP_003098329.1 rubredoxin -
  ACFELC_RS28905 (ACFELC_28905) - 6201915..6202082 (-) 168 WP_003098330.1 rubredoxin -
  ACFELC_RS28910 (ACFELC_28910) - 6202216..6202617 (-) 402 WP_003098332.1 heme-binding protein -

Sequence


Protein


Download         Length: 691 a.a.        Molecular weight: 76178.88 Da        Isoelectric Point: 7.2591

>NTDB_id=954674 ACFELC_RS28875 WP_003096624.1 6195710..6197785(+) (recG) [Pseudomonas aeruginosa strain 238641E_ID020]
MTELSRVPVTALKGVGAALAEKLARVGLETLQDILFHLPLRYQDRTRVTAIGALRPGADAVVEGVVAGADVVMGRRRSLL
VRLQDGSGTLSLRFYHFSQAQKDGLKRGTHLRCYGEVRPGASGLEIYHPEYRALNGDEPIPVEQTLTPIYPTTEGLTQQR
LRQLSQQALAMLGPSSLPDWLPAELARDYQLGPLDQAIRYLHRPPPDADIEELAEGRHWAQLRLAFEELLTHQLSLQRLR
EAVRSQAAPRLPAASRLPKRFLANLGFQPTGAQRRVGAEIAYDLAQDEPMLRLVQGDVGAGKTVVAALAALQAIEAGYQV
ALMAPTEILAEQHFLNFSKWLQPLDIEVAWLAGKLKGKARAAALERIGDGAPMVVGTHALFQDEVKFKRLALAIIDEQHR
FGVQQRLALRQKGVDGRLCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRIEVIERVRAACRE
GRQAYWVCTLIEESEELTCQAAETTYEELSSALGELRVGLIHGRMKPADKAVVMEAFKEGMLQLLVATTVIEVGVDVPNA
SLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYHPPLSQIGRERLGIMRETSDGFVIAEKDLELRGPGEMLGTRQTG
LLQFKVADLMRDADLLPAVRDAAQSLLAHWPQHVSPLLERWLRHGQQYGQV

Nucleotide


Download         Length: 2076 bp        

>NTDB_id=954674 ACFELC_RS28875 WP_003096624.1 6195710..6197785(+) (recG) [Pseudomonas aeruginosa strain 238641E_ID020]
ATGACCGAGCTGTCCAGGGTCCCGGTCACCGCGCTAAAGGGCGTAGGCGCCGCGCTGGCGGAGAAGCTCGCTCGGGTAGG
CCTGGAAACCCTGCAGGACATCCTGTTCCACCTGCCCCTGCGCTACCAGGACCGTACCCGCGTCACCGCCATCGGCGCCC
TGCGGCCAGGGGCCGACGCGGTGGTCGAGGGCGTGGTGGCCGGCGCCGACGTGGTGATGGGGCGCCGGCGCAGCCTGCTG
GTGCGCCTGCAGGACGGCAGCGGCACCCTGAGCCTGCGCTTCTACCATTTCAGCCAGGCGCAGAAGGACGGTCTCAAGCG
CGGCACCCACCTGCGCTGCTACGGCGAAGTCCGGCCGGGTGCCTCGGGCCTGGAGATCTACCATCCGGAATACCGCGCGC
TGAACGGCGACGAGCCGATTCCGGTGGAGCAGACCCTGACGCCGATCTACCCGACTACCGAGGGCCTCACCCAGCAGCGC
CTGCGCCAGTTGAGCCAACAGGCCCTGGCCATGCTCGGCCCCAGCAGCCTGCCCGACTGGCTGCCGGCGGAACTGGCCCG
CGACTACCAACTTGGCCCGCTCGACCAGGCGATCCGCTACCTGCACCGGCCGCCACCGGATGCCGACATCGAGGAACTGG
CCGAAGGCCGGCACTGGGCGCAGTTGCGCCTGGCCTTCGAAGAACTGCTGACCCACCAGTTGTCCCTGCAGCGTCTGCGC
GAAGCCGTGCGCTCGCAGGCAGCGCCGCGCCTGCCGGCGGCCAGCCGCTTGCCGAAACGCTTTCTTGCCAACCTCGGCTT
CCAGCCGACCGGCGCGCAACGCCGGGTCGGCGCGGAAATCGCCTACGACCTGGCCCAGGACGAGCCGATGCTGCGCCTGG
TGCAAGGCGACGTCGGCGCCGGCAAGACCGTGGTCGCCGCCCTCGCCGCCCTGCAAGCCATAGAGGCCGGCTACCAGGTG
GCGCTGATGGCGCCGACCGAGATCCTCGCCGAGCAGCATTTCCTCAACTTCAGCAAGTGGCTCCAGCCGCTGGACATCGA
AGTCGCCTGGCTGGCCGGCAAGCTCAAGGGCAAGGCCCGCGCGGCGGCACTGGAACGCATCGGCGACGGTGCGCCGATGG
TGGTCGGCACCCACGCGCTGTTCCAGGATGAAGTGAAATTCAAGCGCCTTGCGCTGGCGATCATCGACGAACAGCACCGC
TTCGGCGTGCAACAGCGCCTGGCCCTGCGCCAGAAGGGCGTGGACGGCAGGCTCTGCCCGCACCAGTTGATCATGACCGC
CACGCCGATCCCGCGGACCCTGGCGATGAGCGCCTATGCCGACCTCGACACCTCGATCCTCGACGAGCTGCCGCCCGGGC
GTACCCCAGTGAATACCGTGCTGGTGGCCGACAGCCGCCGCATCGAGGTGATCGAGCGAGTCCGCGCAGCCTGCCGCGAA
GGGCGCCAGGCCTACTGGGTGTGCACCCTGATCGAAGAGTCCGAGGAGCTTACCTGCCAGGCCGCCGAGACCACCTACGA
AGAGCTTTCCTCGGCGCTGGGCGAACTGCGCGTCGGCCTGATCCACGGGCGCATGAAGCCGGCGGACAAGGCCGTGGTGA
TGGAAGCCTTCAAGGAAGGCATGTTGCAACTGCTGGTGGCGACCACGGTGATCGAGGTCGGCGTCGACGTGCCCAACGCC
AGCCTGATGATCATCGAGAACCCCGAGCGCCTTGGCCTGGCCCAACTGCACCAGTTGCGCGGCCGGGTTGGCCGGGGCAG
CGCCGCCAGCCACTGCGTGCTGCTCTACCACCCACCGCTGTCGCAGATCGGCCGCGAGCGGCTGGGCATCATGCGCGAAA
CCAGCGACGGCTTCGTCATCGCCGAGAAGGACCTGGAATTGCGCGGCCCCGGCGAAATGCTCGGCACCCGCCAAACCGGC
CTGCTGCAATTCAAGGTCGCCGACCTGATGCGCGACGCAGACCTGCTGCCGGCGGTCCGCGATGCCGCCCAATCCCTCCT
GGCGCACTGGCCGCAGCATGTCAGCCCGCTGCTCGAACGGTGGTTGCGCCACGGCCAGCAATACGGTCAAGTGTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0H2ZJ60

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

50.373

97.106

0.489

  recG/mmsA Streptococcus pneumoniae R6

40.868

96.671

0.395

  recG/mmsA Streptococcus pneumoniae R36A

40.868

96.671

0.395

  recG Bacillus subtilis subsp. subtilis str. 168

40.356

97.54

0.394