Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGG/cglG   Type   Machinery gene
Locus tag   QMM27_RS09215 Genome accession   NZ_AP025939
Coordinates   1809023..1809469 (-) Length   148 a.a.
NCBI ID   WP_001842224.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain Utah_35B-24     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1804023..1814469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMM27_RS09185 (Utah35B_17920) - 1804752..1805576 (-) 825 WP_000727909.1 membrane protein insertase YidC -
  QMM27_RS09190 (Utah35B_17930) rnpA 1805551..1805922 (-) 372 WP_000739246.1 ribonuclease P protein component -
  QMM27_RS09195 - 1805939..1806070 (-) 132 WP_000768904.1 hypothetical protein -
  QMM27_RS09200 (Utah35B_17940) - 1806071..1807261 (-) 1191 WP_000167769.1 acetate/propionate family kinase -
  QMM27_RS09205 (Utah35B_17950) comYH 1807312..1808265 (-) 954 WP_000345080.1 class I SAM-dependent methyltransferase Machinery gene
  QMM27_RS09210 - 1808326..1808920 (-) 595 Protein_1797 methyltransferase domain-containing protein -
  QMM27_RS09215 (Utah35B_17980) comGG/cglG 1809023..1809469 (-) 447 WP_001842224.1 competence type IV pilus minor pilin ComGG Machinery gene
  QMM27_RS09220 comGF/cglF 1809447..1809908 (-) 462 WP_000250539.1 competence type IV pilus minor pilin ComGF Machinery gene
  QMM27_RS09225 (Utah35B_18000) comGE/cglE 1809871..1810173 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  QMM27_RS09230 (Utah35B_18010) comGD/cglD 1810136..1810540 (-) 405 WP_000588030.1 competence type IV pilus minor pilin ComGD Machinery gene
  QMM27_RS09235 (Utah35B_18020) comGC/cglC 1810533..1810859 (-) 327 WP_000738625.1 competence type IV pilus major pilin ComGC Machinery gene
  QMM27_RS09240 (Utah35B_18030) comGB/cglB 1810861..1811877 (-) 1017 WP_078102766.1 competence type IV pilus assembly protein ComGB Machinery gene
  QMM27_RS09245 (Utah35B_18040) comGA/cglA/cilD 1811825..1812766 (-) 942 WP_000249571.1 competence type IV pilus ATPase ComGA Machinery gene
  QMM27_RS09250 (Utah35B_18050) - 1812842..1813207 (-) 366 WP_000286415.1 DUF1033 family protein -
  QMM27_RS09255 (Utah35B_18060) - 1813358..1814416 (-) 1059 WP_000649470.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence


Protein


Download         Length: 148 a.a.        Molecular weight: 17259.94 Da        Isoelectric Point: 10.5573

>NTDB_id=95464 QMM27_RS09215 WP_001842224.1 1809023..1809469(-) (comGG/cglG) [Streptococcus pneumoniae strain Utah_35B-24]
MWKKKKVKAGVLLYAVTIAAIFSLLLQFYLNRQIAHYQDYALNKEKLVAFAMAKRTKDKAEQESGEQVFNLGQVSYQNKK
TSLVTTVRTSKSQYEFLFPSVKIKEEKRDKKEEVATDSSEKAEKKNQKRSLKRKRIPSQFNYNTLNPE

Nucleotide


Download         Length: 447 bp        

>NTDB_id=95464 QMM27_RS09215 WP_001842224.1 1809023..1809469(-) (comGG/cglG) [Streptococcus pneumoniae strain Utah_35B-24]
GTGTGGAAAAAGAAGAAAGTTAAGGCAGGTGTTCTCCTCTACGCAGTCACCATAGCAGCCATCTTTAGTCTTTTGTTGCA
ATTTTATTTGAACCGACAAATCGCCCACTATCAAGACTATGCTTTAAATAAAGAAAAATTGGTTGCTTTTGCCATGGCTA
AACGAACCAAGGATAAAGCCGAGCAAGAAAGTGGGGAACAGGTTTTTAATCTAGGTCAGGTAAGCTATCAAAACAAGAAA
ACAAGCTTGGTGACGACTGTTCGTACGTCTAAGAGCCAATATGAGTTTCTGTTTCCTTCAGTCAAAATCAAAGAAGAGAA
AAGAGATAAAAAGGAAGAGGTAGCGACCGATTCAAGCGAAAAAGCGGAGAAAAAAAATCAGAAGAGAAGCCTGAAAAGAA
AGAGAATTCCTAGTCAATTCAACTATAATACGTTGAATCCAGAATAG

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus pneumoniae Rx1

94.872

79.054

0.75

  comGG/cglG Streptococcus pneumoniae D39

94.872

79.054

0.75

  comGG/cglG Streptococcus pneumoniae R6

94.872

79.054

0.75

  comGG/cglG Streptococcus pneumoniae TIGR4

94.872

79.054

0.75

  comGG/cglG Streptococcus mitis NCTC 12261

89.344

82.432

0.736

  comGG/cglG Streptococcus mitis SK321

86.066

82.432

0.709


Multiple sequence alignment