Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   QMM27_RS09205 Genome accession   NZ_AP025939
Coordinates   1807312..1808265 (-) Length   317 a.a.
NCBI ID   WP_000345080.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain Utah_35B-24     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1802312..1813265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMM27_RS09175 (Utah35B_17900) - 1803073..1803696 (-) 624 WP_000932636.1 hypothetical protein -
  QMM27_RS09180 (Utah35B_17910) jag 1803747..1804733 (-) 987 WP_000260015.1 RNA-binding cell elongation regulator Jag/EloR -
  QMM27_RS09185 (Utah35B_17920) - 1804752..1805576 (-) 825 WP_000727909.1 membrane protein insertase YidC -
  QMM27_RS09190 (Utah35B_17930) rnpA 1805551..1805922 (-) 372 WP_000739246.1 ribonuclease P protein component -
  QMM27_RS09195 - 1805939..1806070 (-) 132 WP_000768904.1 hypothetical protein -
  QMM27_RS09200 (Utah35B_17940) - 1806071..1807261 (-) 1191 WP_000167769.1 acetate/propionate family kinase -
  QMM27_RS09205 (Utah35B_17950) comYH 1807312..1808265 (-) 954 WP_000345080.1 class I SAM-dependent methyltransferase Machinery gene
  QMM27_RS09210 - 1808326..1808920 (-) 595 Protein_1797 methyltransferase domain-containing protein -
  QMM27_RS09215 (Utah35B_17980) comGG/cglG 1809023..1809469 (-) 447 WP_001842224.1 competence type IV pilus minor pilin ComGG Machinery gene
  QMM27_RS09220 comGF/cglF 1809447..1809908 (-) 462 WP_000250539.1 competence type IV pilus minor pilin ComGF Machinery gene
  QMM27_RS09225 (Utah35B_18000) comGE/cglE 1809871..1810173 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  QMM27_RS09230 (Utah35B_18010) comGD/cglD 1810136..1810540 (-) 405 WP_000588030.1 competence type IV pilus minor pilin ComGD Machinery gene
  QMM27_RS09235 (Utah35B_18020) comGC/cglC 1810533..1810859 (-) 327 WP_000738625.1 competence type IV pilus major pilin ComGC Machinery gene
  QMM27_RS09240 (Utah35B_18030) comGB/cglB 1810861..1811877 (-) 1017 WP_078102766.1 competence type IV pilus assembly protein ComGB Machinery gene
  QMM27_RS09245 (Utah35B_18040) comGA/cglA/cilD 1811825..1812766 (-) 942 WP_000249571.1 competence type IV pilus ATPase ComGA Machinery gene
  QMM27_RS09250 (Utah35B_18050) - 1812842..1813207 (-) 366 WP_000286415.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35728.98 Da        Isoelectric Point: 4.2474

>NTDB_id=95463 QMM27_RS09205 WP_000345080.1 1807312..1808265(-) (comYH) [Streptococcus pneumoniae strain Utah_35B-24]
MDFEKIEQAYIYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELEQVKDNNQALKRLALRKEEWLKTYQFLLMKAGQT
EPLQVNHQFTPDAIALLLVFIVEELFKEEEITILEMGSGMGILGATFLTSLTKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SDLLKEWLKEEASLVAMISLPENLFANAKQSKTIFILQKKSEIAVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=95463 QMM27_RS09205 WP_000345080.1 1807312..1808265(-) (comYH) [Streptococcus pneumoniae strain Utah_35B-24]
ATGGATTTTGAAAAAATTGAACAAGCTTATATCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAACAGCATCTATCTGGATGGTGAGACTGAACTAGAACAGGTCAAAGACAACAATC
AGGCCCTTAAGCGTTTAGCACTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAAACA
GAACCCTTGCAGGTCAATCACCAGTTTACACCGGATGCTATTGCTTTACTTTTGGTGTTTATTGTGGAAGAGCTGTTTAA
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGGATGGGAATTTTGGGCGCTACTTTCTTGACCTCGCTTACTAAAA
AGGTGGATTATTTGGGAATGGAAGTGGATGATTTGCTGATTGATTTGGCAGCTAGTATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGTCCACAAATGCTCAAAGAAAGTGATGTGGTCATCAGCGACTTGCCTGTTGG
CTATTATCCTGATGATGCCGTTGCGTCGCGCCATCAAGTTGCTTCTAGCCAAGAACATACTTACGCCCATCACTTGCTCA
TGGAACAAGGGCTTAAGTACCTCAAGTCAGACGGATACGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCAGTCCTCAA
AGTGATTTGTTAAAAGAATGGCTGAAAGAAGAGGCGAGTCTGGTTGCTATGATTAGTCTGCCTGAAAATCTCTTTGCTAA
TGCTAAACAATCTAAGACTATTTTTATCCTACAGAAGAAAAGTGAAATAGCAGTGGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

54.952

98.738

0.543
  comYH Streptococcus mutans UA159

54.633

98.738

0.539

Multiple sequence alignment