Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   ACF1RT_RS09970 Genome accession   NZ_CP172847
Coordinates   2000817..2001410 (-) Length   197 a.a.
NCBI ID   WP_002262395.1    Uniprot ID   Q8CWW3
Organism   Streptococcus mutans strain DPC6143     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1995817..2006410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF1RT_RS09940 (ACF1RT_09940) - 1996080..1996292 (-) 213 WP_002262389.1 hypothetical protein -
  ACF1RT_RS09945 (ACF1RT_09945) - 1996419..1996844 (-) 426 WP_002269684.1 hypothetical protein -
  ACF1RT_RS09950 (ACF1RT_09950) spx 1997096..1997494 (-) 399 WP_002262391.1 transcriptional regulator Spx -
  ACF1RT_RS09955 (ACF1RT_09955) recA 1997579..1998730 (-) 1152 WP_002262392.1 recombinase RecA Machinery gene
  ACF1RT_RS09960 (ACF1RT_09960) cinA 1998770..2000026 (-) 1257 WP_002266115.1 competence/damage-inducible protein A Machinery gene
  ACF1RT_RS09965 (ACF1RT_09965) - 2000175..2000735 (-) 561 WP_002268198.1 DNA-3-methyladenine glycosylase I -
  ACF1RT_RS09970 (ACF1RT_09970) ruvA 2000817..2001410 (-) 594 WP_002262395.1 Holliday junction branch migration protein RuvA Machinery gene
  ACF1RT_RS09975 (ACF1RT_09975) hexB 2001593..2003548 (-) 1956 WP_226711215.1 DNA mismatch repair endonuclease MutL Machinery gene
  ACF1RT_RS09980 (ACF1RT_09980) - 2003773..2004051 (+) 279 Protein_1914 transposase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21896.11 Da        Isoelectric Point: 5.6313

>NTDB_id=954473 ACF1RT_RS09970 WP_002262395.1 2000817..2001410(-) (ruvA) [Streptococcus mutans strain DPC6143]
MYDYIKGNLTKITAKYIVLETGGLGYVINVANPYSFSNQINQAIQIYIHHVVREDAHLLYGFHTEDEKAVFLNLISVSGI
GPTSALAIIAADDNEGLVKAIDHSDVNYLMKFPKIGKKTAQQMVLDLAGKFVDINEVSTDKSKVSTINNNQELEEAVEAL
LALGYKTNELKKIEKFFEGTTDTAENYIKSALKMLMK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=954473 ACF1RT_RS09970 WP_002262395.1 2000817..2001410(-) (ruvA) [Streptococcus mutans strain DPC6143]
ATGTACGATTATATTAAAGGGAATTTAACCAAAATTACAGCTAAATATATTGTCTTAGAAACTGGCGGTTTGGGTTATGT
AATTAATGTTGCCAATCCTTATAGTTTTTCTAATCAGATAAATCAAGCTATTCAAATTTATATTCACCATGTTGTCCGTG
AAGATGCCCATCTTCTTTATGGTTTTCATACTGAGGATGAAAAGGCGGTTTTTCTTAATCTTATCTCTGTTTCAGGAATC
GGTCCAACTTCAGCATTAGCTATTATTGCGGCTGATGATAATGAAGGTTTGGTTAAAGCTATTGACCACAGTGATGTAAA
CTATTTGATGAAATTCCCTAAAATTGGGAAGAAAACAGCTCAACAAATGGTGCTTGATTTAGCAGGTAAATTTGTAGATA
TTAATGAAGTCTCAACCGATAAAAGCAAAGTGAGCACTATTAATAATAATCAAGAACTTGAAGAGGCGGTTGAAGCACTT
TTGGCTCTTGGTTACAAAACAAATGAACTTAAGAAGATAGAAAAATTTTTTGAAGGAACGACTGATACGGCAGAAAATTA
TATTAAATCTGCTCTAAAAATGTTGATGAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(153-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8CWW3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

72.081

100

0.721
  ruvA Streptococcus pneumoniae D39

72.081

100

0.721
  ruvA Streptococcus pneumoniae TIGR4

72.081

100

0.721
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.901

100

0.411