Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   ACF1RT_RS01840 Genome accession   NZ_CP172847
Coordinates   367896..368594 (+) Length   232 a.a.
NCBI ID   WP_002263491.1    Uniprot ID   Q8DSH0
Organism   Streptococcus mutans strain DPC6143     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 362896..373594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF1RT_RS01815 (ACF1RT_01815) gatC 363086..363388 (+) 303 WP_002263475.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  ACF1RT_RS01820 (ACF1RT_01820) gatA 363388..364854 (+) 1467 WP_002271770.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  ACF1RT_RS01825 (ACF1RT_01825) gatB 364854..366293 (+) 1440 WP_002282413.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  ACF1RT_RS01830 (ACF1RT_01830) - 366432..366845 (+) 414 Protein_337 transposase -
  ACF1RT_RS01835 (ACF1RT_01835) - 366838..367791 (+) 954 Protein_338 reverse transcriptase domain-containing protein -
  ACF1RT_RS01840 (ACF1RT_01840) scnR 367896..368594 (+) 699 WP_002263491.1 response regulator transcription factor Regulator
  ACF1RT_RS01845 (ACF1RT_01845) - 368612..369991 (+) 1380 WP_019313405.1 sensor histidine kinase KdpD -
  ACF1RT_RS01850 (ACF1RT_01850) - 370577..371826 (-) 1250 Protein_341 ISL3-like element ISSmu2 family transposase -
  ACF1RT_RS01855 (ACF1RT_01855) - 372114..373022 (+) 909 WP_002263495.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 26106.25 Da        Isoelectric Point: 6.3461

>NTDB_id=954394 ACF1RT_RS01840 WP_002263491.1 367896..368594(+) (scnR) [Streptococcus mutans strain DPC6143]
MSFESQLLKKHILIVDDDTSLNQSIKEVLMSRGFNNISSAYSIDEGIDIFSVSKIDLIILDVMLPDGEGYLLAKYIRKSS
DVPILFLTAKNSPDDEIKGLDSGGDDFVTKPFLPKTLSYRIIALLRRSYKGESELIELTFCTIDLNNASVLKGNEHLSLT
PTEIQILRKLYVNKNHIVSTEAICDAVWGLENFGYEKSLMVHIRNIREKIEKNSSKPVHLITVKGLGYKLVI

Nucleotide


Download         Length: 699 bp        

>NTDB_id=954394 ACF1RT_RS01840 WP_002263491.1 367896..368594(+) (scnR) [Streptococcus mutans strain DPC6143]
GTGTCTTTTGAATCACAATTATTGAAAAAGCATATCCTAATCGTAGATGATGATACATCATTGAACCAGTCCATCAAAGA
GGTTTTGATGAGTCGAGGGTTTAACAATATCAGTTCTGCCTATAGTATAGATGAAGGGATTGATATTTTTTCGGTATCAA
AGATTGATTTGATCATACTGGATGTCATGTTGCCCGATGGGGAAGGTTATTTATTGGCCAAATACATTCGAAAATCGTCA
GATGTCCCCATTTTATTTTTAACCGCAAAAAATAGTCCCGATGATGAAATCAAAGGACTTGATTCAGGAGGAGATGATTT
TGTCACCAAACCATTTCTTCCCAAGACCCTGTCTTATAGGATTATAGCCTTACTGAGGCGATCCTACAAAGGTGAATCTG
AACTTATCGAACTTACTTTCTGCACCATTGATTTAAATAATGCCAGTGTTTTAAAAGGCAATGAACATCTATCACTGACC
CCCACAGAAATTCAGATTCTTCGCAAACTTTATGTCAATAAAAACCACATCGTCTCCACAGAAGCGATTTGCGATGCGGT
GTGGGGACTTGAAAACTTTGGATACGAAAAATCATTAATGGTACATATCCGCAATATCAGAGAAAAAATCGAGAAAAACT
CCTCAAAGCCAGTGCATCTCATTACAGTCAAGGGTCTCGGGTATAAGCTGGTCATTTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(12-120)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DSH0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

42.411

96.552

0.409
  vicR Streptococcus mutans UA159

37.826

99.138

0.375
  micA Streptococcus pneumoniae Cp1015

36.842

98.276

0.362