Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   ACHGMI_RS10155 Genome accession   NZ_CP172417
Coordinates   1872338..1874386 (+) Length   682 a.a.
NCBI ID   WP_017694856.1    Uniprot ID   -
Organism   Bacillus subtilis strain AKPS2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1867338..1879386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHGMI_RS10125 spoVM 1867974..1868054 (+) 81 WP_003221545.1 stage V sporulation protein SpoVM -
  ACHGMI_RS10130 rpmB 1868127..1868315 (-) 189 WP_003221548.1 50S ribosomal protein L28 -
  ACHGMI_RS10135 yloU 1868592..1868954 (+) 363 WP_003232054.1 Asp23/Gls24 family envelope stress response protein -
  ACHGMI_RS10140 fakA 1868970..1870631 (+) 1662 WP_017694854.1 DAK2 domain-containing protein -
  ACHGMI_RS10145 sdaAB 1870770..1871432 (+) 663 WP_003232050.1 L-serine ammonia-lyase, iron-sulfur-dependent subunit beta -
  ACHGMI_RS10150 sdaAA 1871458..1872360 (+) 903 WP_017694855.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  ACHGMI_RS10155 recG 1872338..1874386 (+) 2049 WP_017694856.1 ATP-dependent DNA helicase RecG Machinery gene
  ACHGMI_RS10160 fapR 1874495..1875061 (+) 567 WP_003232044.1 transcription factor FapR -
  ACHGMI_RS10165 plsX 1875075..1876076 (+) 1002 WP_017694857.1 phosphate acyltransferase PlsX -
  ACHGMI_RS10170 fabD 1876095..1877048 (+) 954 WP_015383644.1 ACP S-malonyltransferase -
  ACHGMI_RS10175 fabG 1877041..1877781 (+) 741 WP_015383645.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  ACHGMI_RS10180 acpP 1877865..1878098 (+) 234 WP_003154310.1 acyl carrier protein -
  ACHGMI_RS10185 rncS 1878238..1878987 (+) 750 WP_003232030.1 ribonuclease III -

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 78139.74 Da        Isoelectric Point: 7.4259

>NTDB_id=953688 ACHGMI_RS10155 WP_017694856.1 1872338..1874386(+) (recG) [Bacillus subtilis strain AKPS2]
MKQNQQTSIANIKGIGPETEKTLHELGIYDISDLLNYFPYRYDDYELRDLEEVKHDERVTVEGKVHSEPSLTYYGKKRNR
LTFRLLVGHYLITAVCFNRPYLKKKLSLGSVVTVSGKWDKHRQTISVQELKNGPHQEDKSIEPVYSVKENVTVKMMRRFI
QQALTQYADSLPDPLPEKLRKSYKLPDYYQALKAMHQPETREALKLARRRFVYEEFLLFQLKMQAFRKAEREQTQGIRQR
FSNEELMRFIKSLPFPLTNAQSRVLREITADMSSPYKMNRLLQGDVGSGKTAVAAIALYAAILSGYQGALMVPTEILAEQ
HADSLVSLFEKWDVSVALLTSSVKGKRRKELLERLAAGEIDILVGTHALIQDEVEFKALSLVITDEQHRFGVEQRKKLRN
KGQDPDVLFMTATPIPRTLAITVFGEMDVSVIDEMPAGRKRIETYWVKHDMLDRILAFVEKELKQGRQAYIICPLIEESD
KLDVQNAIDVYNMLSDIFRGKWNVGLMHGKLHSDEKDQVMREFSANHCQILVSTTVVEVGVNVPNATIMVIYDADRFGLS
QLHQLRGRVGRGEHQSFCILMADPKSETGKERMRIMSETNDGFELSEKDLELRGPGDFFGKKQSGMPEFKVADMVHDYRA
LETARQDAANLVASDAFWKEPEYAVLRDELLKNGVMDGEKLS

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=953688 ACHGMI_RS10155 WP_017694856.1 1872338..1874386(+) (recG) [Bacillus subtilis strain AKPS2]
GTGAAACAAAATCAGCAAACTAGTATAGCTAACATTAAGGGTATTGGGCCGGAAACAGAAAAAACATTACACGAACTCGG
TATTTATGACATTTCTGATCTTCTGAATTATTTCCCTTATCGCTATGATGACTACGAGCTGAGGGATTTAGAAGAAGTAA
AGCATGATGAAAGAGTCACAGTCGAAGGGAAGGTTCATTCAGAGCCTTCTCTTACCTATTACGGAAAAAAACGAAACAGG
CTGACATTCAGGCTTCTGGTCGGCCACTATTTAATCACAGCCGTATGTTTTAACCGGCCTTATTTGAAGAAGAAGCTTTC
GCTCGGCTCTGTGGTGACGGTTTCAGGTAAATGGGACAAGCACCGCCAAACCATCTCTGTTCAGGAGTTGAAAAACGGGC
CGCATCAAGAAGACAAAAGTATTGAACCAGTGTATTCTGTGAAAGAAAATGTTACCGTCAAAATGATGAGGCGCTTTATT
CAGCAGGCGCTGACCCAATATGCAGACTCACTTCCTGATCCTCTTCCGGAAAAGCTAAGAAAAAGCTATAAACTGCCTGA
CTATTATCAGGCGTTAAAAGCAATGCACCAGCCTGAAACAAGGGAAGCATTAAAGCTTGCCAGACGGCGGTTTGTTTATG
AAGAATTTTTGTTGTTTCAGTTGAAAATGCAGGCGTTCCGAAAGGCGGAAAGAGAGCAGACACAAGGGATACGGCAGCGT
TTTTCAAACGAAGAACTCATGAGATTTATCAAAAGCCTCCCGTTTCCCCTCACAAACGCCCAGTCACGCGTTCTTCGCGA
AATAACAGCAGACATGTCTTCTCCATACAAAATGAACCGCCTTCTTCAAGGGGACGTTGGATCAGGAAAAACGGCAGTTG
CCGCCATTGCACTGTATGCCGCGATCCTATCCGGATACCAAGGAGCGCTCATGGTGCCGACAGAAATTCTGGCCGAGCAG
CATGCTGATTCGCTCGTTTCGCTATTTGAAAAATGGGACGTCAGCGTTGCTCTTTTGACAAGCTCTGTTAAAGGGAAGCG
GCGAAAAGAACTGCTTGAGCGTCTTGCGGCGGGTGAGATTGATATTCTTGTAGGAACCCACGCTTTAATCCAAGACGAGG
TGGAGTTTAAGGCGCTGAGTCTCGTTATTACTGATGAACAGCACAGATTTGGAGTTGAGCAGCGCAAAAAGCTTCGGAAC
AAAGGGCAGGATCCCGATGTTCTCTTTATGACAGCCACTCCAATCCCAAGAACATTAGCGATCACAGTGTTCGGTGAAAT
GGATGTATCTGTCATTGATGAGATGCCGGCTGGACGAAAGCGAATTGAAACCTATTGGGTAAAACATGACATGCTGGATC
GTATTTTGGCATTTGTCGAAAAAGAATTAAAGCAAGGCAGGCAGGCTTATATCATCTGTCCGCTGATTGAAGAATCAGAC
AAGCTTGATGTGCAAAACGCCATTGACGTGTACAATATGCTTTCTGATATTTTTCGGGGAAAATGGAATGTCGGCCTTAT
GCATGGAAAGCTGCATTCCGATGAAAAAGACCAGGTCATGAGAGAATTCAGCGCAAATCACTGTCAAATTCTCGTATCAA
CCACTGTAGTTGAGGTTGGCGTGAATGTTCCGAATGCAACGATTATGGTGATTTATGACGCCGACCGTTTCGGACTATCA
CAGCTTCACCAGCTGCGCGGCCGTGTTGGACGGGGTGAGCATCAATCTTTCTGTATTCTGATGGCTGATCCAAAATCAGA
AACAGGGAAAGAACGGATGAGGATCATGTCGGAGACCAATGACGGTTTCGAGCTGTCTGAAAAGGATCTGGAACTGAGAG
GTCCCGGTGATTTCTTCGGAAAAAAACAAAGCGGAATGCCGGAATTTAAAGTGGCGGACATGGTTCATGATTACAGAGCG
CTTGAAACGGCAAGGCAGGATGCTGCGAATCTTGTGGCTTCTGACGCGTTCTGGAAGGAGCCGGAATACGCTGTGTTACG
AGATGAATTGCTGAAGAACGGAGTAATGGACGGGGAAAAATTAAGCTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(452-572)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(599-670)

RecG wedge domain (RecG_wedge)

(9-165)

DEAD/DEAH box helicase (DEAD)

(260-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Bacillus subtilis subsp. subtilis str. 168

99.413

100

0.994
  recG/mmsA Streptococcus pneumoniae R6

49.325

97.801

0.482
  recG/mmsA Streptococcus pneumoniae R36A

49.325

97.801

0.482
  recG Neisseria meningitidis strain C311

39.542

96.041

0.38