Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   WHP50_RS07090 Genome accession   NZ_CP148264
Coordinates   1388808..1389989 (-) Length   393 a.a.
NCBI ID   WP_052789526.1    Uniprot ID   A0A5Y8XKZ0
Organism   Campylobacter jejuni strain Z1322HCJ0003     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1383808..1394989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP50_RS07060 (WHP50_07060) - 1384353..1384694 (+) 342 WP_002868232.1 hypothetical protein -
  WHP50_RS07065 (WHP50_07065) flgM 1384757..1384954 (+) 198 WP_002855791.1 flagellar biosynthesis anti-sigma factor FlgM -
  WHP50_RS07070 (WHP50_07070) - 1384996..1385430 (+) 435 WP_002779263.1 flagellar protein FlgN -
  WHP50_RS07075 (WHP50_07075) flgK 1385440..1387266 (+) 1827 WP_002860346.1 flagellar hook-associated protein FlgK -
  WHP50_RS07080 (WHP50_07080) - 1387283..1388047 (+) 765 WP_002851318.1 TIGR02757 family protein -
  WHP50_RS07085 (WHP50_07085) - 1388051..1388815 (+) 765 WP_038814201.1 TSUP family transporter -
  WHP50_RS07090 (WHP50_07090) ctsF 1388808..1389989 (-) 1182 WP_052789526.1 type II secretion system F family protein Machinery gene
  WHP50_RS07095 (WHP50_07095) ctsE 1389986..1391545 (-) 1560 WP_079266714.1 GspE/PulE family protein Machinery gene
  WHP50_RS07100 (WHP50_07100) ctsX 1391535..1392122 (-) 588 WP_002851370.1 membrane protein Machinery gene
  WHP50_RS07105 (WHP50_07105) ctsP 1392126..1392734 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  WHP50_RS07110 (WHP50_07110) ctsD 1392727..1394139 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHP50_RS07115 (WHP50_07115) ctsR 1394117..1394428 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45677.29 Da        Isoelectric Point: 8.7508

>NTDB_id=953631 WHP50_RS07090 WP_052789526.1 1388808..1389989(-) (ctsF) [Campylobacter jejuni strain Z1322HCJ0003]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISCLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=953631 WHP50_RS07090 WP_052789526.1 1388808..1389989(-) (ctsF) [Campylobacter jejuni strain Z1322HCJ0003]
ATGAAATTTTATGAAGTGGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCACTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTTGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Y8XKZ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.724

99.746

0.985