Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   WHP50_RS07100 Genome accession   NZ_CP148264
Coordinates   1391535..1392122 (-) Length   195 a.a.
NCBI ID   WP_002851370.1    Uniprot ID   A0AB36G4D4
Organism   Campylobacter jejuni strain Z1322HCJ0003     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1386535..1397122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP50_RS07080 (WHP50_07080) - 1387283..1388047 (+) 765 WP_002851318.1 TIGR02757 family protein -
  WHP50_RS07085 (WHP50_07085) - 1388051..1388815 (+) 765 WP_038814201.1 TSUP family transporter -
  WHP50_RS07090 (WHP50_07090) ctsF 1388808..1389989 (-) 1182 WP_052789526.1 type II secretion system F family protein Machinery gene
  WHP50_RS07095 (WHP50_07095) ctsE 1389986..1391545 (-) 1560 WP_079266714.1 GspE/PulE family protein Machinery gene
  WHP50_RS07100 (WHP50_07100) ctsX 1391535..1392122 (-) 588 WP_002851370.1 membrane protein Machinery gene
  WHP50_RS07105 (WHP50_07105) ctsP 1392126..1392734 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  WHP50_RS07110 (WHP50_07110) ctsD 1392727..1394139 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHP50_RS07115 (WHP50_07115) ctsR 1394117..1394428 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 23359.43 Da        Isoelectric Point: 9.8409

>NTDB_id=953633 WHP50_RS07100 WP_002851370.1 1391535..1392122(-) (ctsX) [Campylobacter jejuni strain Z1322HCJ0003]
MQERIKELELRYKYFLLKKYLKYLLLIILISVIAFCFFVLMQKYNKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISRE
KLYKELEEVKAVQENTHISKIEIDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKTIFWALKANELDKQKQDSW
LIFAQAKRALGEEKEAQSALDAYINYYGLMELDGK

Nucleotide


Download         Length: 588 bp        

>NTDB_id=953633 WHP50_RS07100 WP_002851370.1 1391535..1392122(-) (ctsX) [Campylobacter jejuni strain Z1322HCJ0003]
ATGCAAGAAAGAATTAAAGAGCTTGAGCTTAGGTATAAATACTTTTTACTTAAAAAATATTTAAAATATTTATTATTAAT
TATTCTAATATCAGTAATAGCATTTTGTTTTTTTGTGCTAATGCAAAAATATAATAAGCAAAAAAATATTTATTTGCAAG
CTATTGAACATAAAAAGCATTTGGAGCAAAAGATTCTTCAAGCGCAAATTTTACAAGAAAAAAATAAGATTTCTAGGGAA
AAGTTATATAAAGAACTAGAAGAAGTTAAAGCGGTGCAGGAAAATACACATATTAGCAAGATAGAAATTGATTCTAAAAT
TTTAAATATTTCTGATTTAAAAAAATCTTTTTATCAAAATCCAAGCTATGAAAAGGCATTAAATTTAGCTAAGAAGTATT
TTGATATTAAAGCTTATCAAAAGACAATATTTTGGGCTTTAAAAGCCAATGAACTTGACAAGCAAAAACAAGATTCTTGG
CTGATTTTTGCTCAGGCTAAAAGAGCTTTAGGCGAAGAAAAAGAAGCTCAAAGTGCTTTAGATGCTTATATAAATTATTA
TGGTTTAATGGAATTAGATGGAAAGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

100

100

1