Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   ACHZDB_RS11375 Genome accession   NZ_CP172405
Coordinates   2494583..2496664 (-) Length   693 a.a.
NCBI ID   WP_399423997.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB503     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2489583..2501664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHZDB_RS11365 (ACHZDB_11365) - 2490772..2492163 (-) 1392 WP_039985618.1 uracil-xanthine permease family protein -
  ACHZDB_RS11370 (ACHZDB_11370) - 2492416..2494377 (-) 1962 WP_079402013.1 S9 family peptidase -
  ACHZDB_RS11375 (ACHZDB_11375) recG 2494583..2496664 (-) 2082 WP_399423997.1 ATP-dependent DNA helicase RecG Machinery gene
  ACHZDB_RS11380 (ACHZDB_11380) trmH 2496988..2497671 (-) 684 WP_005430068.1 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH -
  ACHZDB_RS11385 (ACHZDB_11385) spoT 2497725..2499845 (-) 2121 WP_005434453.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  ACHZDB_RS11390 (ACHZDB_11390) rpoZ 2499885..2500157 (-) 273 WP_005379346.1 DNA-directed RNA polymerase subunit omega -
  ACHZDB_RS11395 (ACHZDB_11395) gmk 2500321..2500944 (-) 624 WP_005430186.1 guanylate kinase -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 76675.56 Da        Isoelectric Point: 7.7494

>NTDB_id=953455 ACHZDB_RS11375 WP_399423997.1 2494583..2496664(-) (recG) [Vibrio campbellii strain LB503]
MSAQMLSAVPLTSLSGVGAKVAEKLAKVGLHSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAAVQGKVMAVDTTFGKRKM
LTVKISDGNGTITLRFFNFTAAMKNNFSNGKLVHAYGEIKRGGMGLEIVHPDYKFYVSEQKPDVEQSLTPVYPTTDGLRQ
ITLRNLTEQALSLLDKAAVQELLPSGLYDHQITMSQALHTIHRPPPTINLDEFDEGKHPAQIRLIMEELLAQNLSMLAVR
SKGQQDVALPLASCDSLKKQLLAQLPFSPTNAQARVVKEIEADLEKTHPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQV
ALMAPTELLAEQHAINFANWFEKMGIQVGWLAGKLKGKAKEGELARIASGEAQMVVGTHALFQEHVEFHHLALVIIDEQH
RFGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDDIVERVRNACL
NEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVKIGLVHGRMKPAEKQAVMQDFKDNKLHLLVATTVIEVGVDVP
NSSLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYHSPLSKTAQKRLGVLRESNDGFVIAQKDLEIRGPGELLGTKQ
TGLADFKIADLVRDQRLIPEVQRIARYIHDNYPTNATAIIDRWLGERDIYSKA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=953455 ACHZDB_RS11375 WP_399423997.1 2494583..2496664(-) (recG) [Vibrio campbellii strain LB503]
ATGTCTGCCCAAATGTTATCTGCTGTTCCTTTAACTTCTCTGTCTGGAGTTGGCGCTAAAGTCGCAGAAAAACTCGCCAA
AGTTGGTTTGCATAGCGTTCAAGATCTTCTGTTTCATCTTCCTCTTCGTTACGAAGATCGCACTCGCATTTACCCAATCG
CCAAACTGCATGCCGGACTTTGGGCGGCGGTACAGGGCAAAGTCATGGCTGTCGATACTACTTTCGGCAAACGCAAAATG
CTGACGGTAAAAATCAGCGACGGCAATGGCACGATTACCCTACGCTTTTTCAACTTTACTGCCGCGATGAAGAACAATTT
CTCGAATGGTAAGTTAGTACACGCTTACGGTGAAATTAAGCGTGGCGGTATGGGCTTAGAAATTGTTCACCCTGACTACA
AGTTTTATGTAAGTGAACAAAAACCGGATGTGGAACAGAGCTTAACCCCCGTTTATCCAACCACCGATGGGTTACGCCAA
ATCACTTTGCGTAACCTGACGGAACAAGCCTTATCACTCCTCGATAAAGCCGCAGTACAAGAGTTGCTTCCTTCTGGTTT
GTACGATCACCAGATCACCATGTCGCAAGCGCTGCATACGATTCATCGACCGCCTCCAACCATTAATTTGGATGAGTTTG
ATGAAGGTAAACACCCTGCTCAAATTCGGTTGATCATGGAAGAATTACTGGCGCAGAACCTCTCTATGTTGGCAGTGCGC
AGCAAAGGACAACAGGACGTTGCATTGCCTTTGGCGTCGTGTGACTCGCTGAAAAAGCAACTACTGGCTCAATTGCCCTT
CTCGCCGACCAATGCTCAAGCACGAGTCGTTAAAGAAATTGAAGCCGATTTGGAAAAAACGCACCCAATGATGCGCCTTG
TTCAAGGTGACGTAGGCTCGGGGAAAACTTTAGTTGCCGCACTCGCAGCAGTCAGAGCAATTGAACACGGCTATCAAGTC
GCTTTAATGGCACCGACCGAGCTGCTCGCCGAACAGCACGCGATTAACTTCGCTAATTGGTTTGAGAAAATGGGCATTCA
GGTCGGTTGGCTAGCTGGAAAATTAAAAGGTAAAGCCAAAGAAGGCGAATTGGCGCGTATTGCCAGTGGTGAAGCGCAAA
TGGTCGTGGGCACTCACGCCCTCTTCCAAGAACATGTTGAGTTCCATCATCTTGCTTTGGTCATTATTGATGAACAACAC
CGCTTTGGTGTCCACCAGCGCTTAGAGCTACGCGAGAAAGGCGCGAAACAAGGCGCTTATCCGCACCAACTCATAATGAC
GGCAACGCCAATTCCGCGAACATTAGCCATGACAGCTTATGCTGACTTAGAAACGTCGGTGATTGATGAGTTACCGCCAG
GTCGAACACCAATCCAAACCGTCGCGATTCCAGACACCAAACGCGATGATATCGTCGAACGAGTGCGCAATGCCTGCTTA
AACGAAGGCAAACAAGCGTATTGGGTATGTACCTTGATTGATGAGTCCGAAGTCTTGGAGGCTCAAGCTGCTGCCGACAC
TGCAGAAGAGCTGCAACGTAAACTGCCTGACGTAAAAATTGGTCTAGTGCACGGACGAATGAAGCCCGCAGAGAAGCAAG
CGGTGATGCAGGATTTCAAAGACAACAAGCTGCATTTACTGGTCGCAACGACAGTGATTGAAGTTGGCGTAGACGTCCCC
AACTCCAGTTTGATGATCATCGAGAACCCAGAGCGTTTAGGTTTGGCTCAGTTGCACCAGCTTAGAGGTCGTGTTGGTCG
AGGTTCAGTGGCTAGCCATTGTGTGTTGCTGTATCACTCGCCACTATCAAAAACCGCCCAAAAACGTTTAGGCGTATTAC
GTGAAAGCAATGACGGCTTTGTGATTGCACAGAAAGACTTAGAGATTCGTGGACCGGGTGAGCTTCTTGGTACCAAGCAA
ACTGGCTTGGCAGATTTTAAAATTGCCGACTTAGTGCGAGATCAGCGCTTAATTCCGGAAGTTCAACGCATTGCACGTTA
CATTCATGACAACTACCCGACGAATGCGACCGCAATTATTGATCGTTGGTTAGGCGAGCGTGACATTTATTCTAAGGCGT
AA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(480-588)

DEAD/DEAH box helicase (DEAD)

(271-433)

RecG wedge domain (RecG_wedge)

(15-172)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-675)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.554

96.97

0.481
  recG/mmsA Streptococcus pneumoniae R6

39.97

97.114

0.388
  recG/mmsA Streptococcus pneumoniae R36A

39.97

97.114

0.388
  recG Bacillus subtilis subsp. subtilis str. 168

39.422

94.805

0.374