Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   WHP87_RS07945 Genome accession   NZ_CP148222
Coordinates   1567622..1568209 (-) Length   195 a.a.
NCBI ID   WP_002858864.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0047     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1562622..1573209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP87_RS07925 (WHP87_07925) - 1563372..1564134 (+) 763 Protein_1542 TIGR02757 family protein -
  WHP87_RS07930 (WHP87_07930) - 1564138..1564902 (+) 765 WP_070309136.1 TSUP family transporter -
  WHP87_RS07935 (WHP87_07935) ctsF 1564895..1566076 (-) 1182 WP_002860343.1 type II secretion system F family protein Machinery gene
  WHP87_RS07940 (WHP87_07940) ctsE 1566073..1567632 (-) 1560 WP_002858863.1 GspE/PulE family protein Machinery gene
  WHP87_RS07945 (WHP87_07945) ctsX 1567622..1568209 (-) 588 WP_002858864.1 hypothetical protein Machinery gene
  WHP87_RS07950 (WHP87_07950) ctsP 1568213..1568821 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  WHP87_RS07955 (WHP87_07955) ctsD 1568814..1570226 (-) 1413 WP_032590707.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHP87_RS07960 (WHP87_07960) ctsR 1570204..1570515 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 23331.38 Da        Isoelectric Point: 9.8409

>NTDB_id=952974 WHP87_RS07945 WP_002858864.1 1567622..1568209(-) (ctsX) [Campylobacter jejuni strain Z1323CCJ0047]
MQERIKELELRYKYFLLKKYLKYLLLVILISVIAFCFFVLMQKYNKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISRD
KLYKELEEVKAVQENTHISKIEIDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKTIFWALKANELDKQKQDSW
LIFAQAKRALGEEKEAQSALDAYINYYGLMELDGK

Nucleotide


Download         Length: 588 bp        

>NTDB_id=952974 WHP87_RS07945 WP_002858864.1 1567622..1568209(-) (ctsX) [Campylobacter jejuni strain Z1323CCJ0047]
ATGCAAGAAAGAATTAAAGAGCTTGAGCTTAGGTATAAATACTTTTTACTTAAAAAATATTTAAAATATTTATTGTTAGT
TATTTTAATATCAGTTATAGCATTTTGTTTTTTTGTGCTAATGCAAAAATATAATAAGCAAAAAAATATTTATTTGCAGG
CTATTGAACATAAAAAGCATTTGGAGCAAAAGATTCTTCAAGCGCAAATTTTACAAGAAAAAAATAAGATTTCTAGGGAC
AAGTTATATAAAGAACTAGAAGAAGTTAAAGCGGTGCAGGAAAATACACATATTAGCAAGATAGAAATTGATTCTAAAAT
TTTAAATATTTCTGATTTAAAAAAATCTTTTTATCAAAATCCAAGCTATGAAAAGGCATTAAATTTAGCTAAGAAGTATT
TTGATATTAAAGCTTATCAAAAGACAATATTTTGGGCTTTAAAAGCCAATGAACTTGACAAGCAAAAACAAGATTCTTGG
CTGATTTTTGCTCAGGCTAAAAGAGCTTTAGGCGAAGAAAAAGAAGCTCAAAGTGCTTTAGATGCTTATATAAATTATTA
TGGTTTAATGGAATTAGATGGAAAGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

98.974

100

0.99