Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   WHP87_RS07960 Genome accession   NZ_CP148222
Coordinates   1570204..1570515 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain Z1323CCJ0047     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1565204..1575515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP87_RS07940 (WHP87_07940) ctsE 1566073..1567632 (-) 1560 WP_002858863.1 GspE/PulE family protein Machinery gene
  WHP87_RS07945 (WHP87_07945) ctsX 1567622..1568209 (-) 588 WP_002858864.1 hypothetical protein Machinery gene
  WHP87_RS07950 (WHP87_07950) ctsP 1568213..1568821 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  WHP87_RS07955 (WHP87_07955) ctsD 1568814..1570226 (-) 1413 WP_032590707.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHP87_RS07960 (WHP87_07960) ctsR 1570204..1570515 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  WHP87_RS07965 (WHP87_07965) nifJ 1570539..1574099 (-) 3561 WP_032590705.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  WHP87_RS07970 (WHP87_07970) - 1574192..1574833 (-) 642 WP_002872339.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=952977 WHP87_RS07960 WP_002855438.1 1570204..1570515(-) (ctsR) [Campylobacter jejuni strain Z1323CCJ0047]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=952977 WHP87_RS07960 WP_002855438.1 1570204..1570515(-) (ctsR) [Campylobacter jejuni strain Z1323CCJ0047]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1