Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   WHP87_RS07935 Genome accession   NZ_CP148222
Coordinates   1564895..1566076 (-) Length   393 a.a.
NCBI ID   WP_002860343.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0047     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1559895..1571076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP87_RS07905 (WHP87_07905) - 1560441..1560782 (+) 342 WP_002784057.1 hypothetical protein -
  WHP87_RS07910 (WHP87_07910) flgM 1560845..1561042 (+) 198 WP_002779262.1 flagellar biosynthesis anti-sigma factor FlgM -
  WHP87_RS07915 (WHP87_07915) - 1561085..1561519 (+) 435 WP_002779263.1 flagellar protein FlgN -
  WHP87_RS07920 (WHP87_07920) flgK 1561529..1563355 (+) 1827 WP_002860346.1 flagellar hook-associated protein FlgK -
  WHP87_RS07925 (WHP87_07925) - 1563372..1564134 (+) 763 Protein_1542 TIGR02757 family protein -
  WHP87_RS07930 (WHP87_07930) - 1564138..1564902 (+) 765 WP_070309136.1 TSUP family transporter -
  WHP87_RS07935 (WHP87_07935) ctsF 1564895..1566076 (-) 1182 WP_002860343.1 type II secretion system F family protein Machinery gene
  WHP87_RS07940 (WHP87_07940) ctsE 1566073..1567632 (-) 1560 WP_002858863.1 GspE/PulE family protein Machinery gene
  WHP87_RS07945 (WHP87_07945) ctsX 1567622..1568209 (-) 588 WP_002858864.1 hypothetical protein Machinery gene
  WHP87_RS07950 (WHP87_07950) ctsP 1568213..1568821 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  WHP87_RS07955 (WHP87_07955) ctsD 1568814..1570226 (-) 1413 WP_032590707.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHP87_RS07960 (WHP87_07960) ctsR 1570204..1570515 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45746.29 Da        Isoelectric Point: 9.2580

>NTDB_id=952972 WHP87_RS07935 WP_002860343.1 1564895..1566076(-) (ctsF) [Campylobacter jejuni strain Z1323CCJ0047]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGTSLPFITHAMLEIYNFLDDYGIFCIFLFVIFNVMLILAYKNFHSFAFSCDF
LFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFINSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=952972 WHP87_RS07935 WP_002860343.1 1564895..1566076(-) (ctsF) [Campylobacter jejuni strain Z1323CCJ0047]
ATGAAATTTTATGAAGTGGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCACTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCACGAGTTTACCTTTTATCACGCATGCAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTAATGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAATACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAAATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTATTTTCTATGCTTAGCGTTGCGATGAAAAGTGGAAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGTGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

97.959

99.746

0.977