Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   WHP79_RS07920 Genome accession   NZ_CP148221
Coordinates   1567079..1567666 (-) Length   195 a.a.
NCBI ID   WP_002858864.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0052     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1562079..1572666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP79_RS07900 (WHP79_07900) - 1562829..1563591 (+) 763 Protein_1541 TIGR02757 family protein -
  WHP79_RS07905 (WHP79_07905) - 1563595..1564359 (+) 765 WP_070309136.1 TSUP family transporter -
  WHP79_RS07910 (WHP79_07910) ctsF 1564352..1565533 (-) 1182 WP_002860343.1 type II secretion system F family protein Machinery gene
  WHP79_RS07915 (WHP79_07915) ctsE 1565530..1567089 (-) 1560 WP_002858863.1 GspE/PulE family protein Machinery gene
  WHP79_RS07920 (WHP79_07920) ctsX 1567079..1567666 (-) 588 WP_002858864.1 hypothetical protein Machinery gene
  WHP79_RS07925 (WHP79_07925) ctsP 1567670..1568278 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  WHP79_RS07930 (WHP79_07930) ctsD 1568271..1569683 (-) 1413 WP_032590707.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHP79_RS07935 (WHP79_07935) ctsR 1569661..1569972 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 23331.38 Da        Isoelectric Point: 9.8409

>NTDB_id=952947 WHP79_RS07920 WP_002858864.1 1567079..1567666(-) (ctsX) [Campylobacter jejuni strain Z1323CCJ0052]
MQERIKELELRYKYFLLKKYLKYLLLVILISVIAFCFFVLMQKYNKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISRD
KLYKELEEVKAVQENTHISKIEIDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKTIFWALKANELDKQKQDSW
LIFAQAKRALGEEKEAQSALDAYINYYGLMELDGK

Nucleotide


Download         Length: 588 bp        

>NTDB_id=952947 WHP79_RS07920 WP_002858864.1 1567079..1567666(-) (ctsX) [Campylobacter jejuni strain Z1323CCJ0052]
ATGCAAGAAAGAATTAAAGAGCTTGAGCTTAGGTATAAATACTTTTTACTTAAAAAATATTTAAAATATTTATTGTTAGT
TATTTTAATATCAGTTATAGCATTTTGTTTTTTTGTGCTAATGCAAAAATATAATAAGCAAAAAAATATTTATTTGCAGG
CTATTGAACATAAAAAGCATTTGGAGCAAAAGATTCTTCAAGCGCAAATTTTACAAGAAAAAAATAAGATTTCTAGGGAC
AAGTTATATAAAGAACTAGAAGAAGTTAAAGCGGTGCAGGAAAATACACATATTAGCAAGATAGAAATTGATTCTAAAAT
TTTAAATATTTCTGATTTAAAAAAATCTTTTTATCAAAATCCAAGCTATGAAAAGGCATTAAATTTAGCTAAGAAGTATT
TTGATATTAAAGCTTATCAAAAGACAATATTTTGGGCTTTAAAAGCCAATGAACTTGACAAGCAAAAACAAGATTCTTGG
CTGATTTTTGCTCAGGCTAAAAGAGCTTTAGGCGAAGAAAAAGAAGCTCAAAGTGCTTTAGATGCTTATATAAATTATTA
TGGTTTAATGGAATTAGATGGAAAGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

98.974

100

0.99