Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   WHP79_RS07910 Genome accession   NZ_CP148221
Coordinates   1564352..1565533 (-) Length   393 a.a.
NCBI ID   WP_002860343.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0052     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1559352..1570533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP79_RS07880 (WHP79_07880) - 1559898..1560239 (+) 342 WP_002784057.1 hypothetical protein -
  WHP79_RS07885 (WHP79_07885) flgM 1560302..1560499 (+) 198 WP_002779262.1 flagellar biosynthesis anti-sigma factor FlgM -
  WHP79_RS07890 (WHP79_07890) - 1560542..1560976 (+) 435 WP_002779263.1 flagellar protein FlgN -
  WHP79_RS07895 (WHP79_07895) flgK 1560986..1562812 (+) 1827 WP_002860346.1 flagellar hook-associated protein FlgK -
  WHP79_RS07900 (WHP79_07900) - 1562829..1563591 (+) 763 Protein_1541 TIGR02757 family protein -
  WHP79_RS07905 (WHP79_07905) - 1563595..1564359 (+) 765 WP_070309136.1 TSUP family transporter -
  WHP79_RS07910 (WHP79_07910) ctsF 1564352..1565533 (-) 1182 WP_002860343.1 type II secretion system F family protein Machinery gene
  WHP79_RS07915 (WHP79_07915) ctsE 1565530..1567089 (-) 1560 WP_002858863.1 GspE/PulE family protein Machinery gene
  WHP79_RS07920 (WHP79_07920) ctsX 1567079..1567666 (-) 588 WP_002858864.1 hypothetical protein Machinery gene
  WHP79_RS07925 (WHP79_07925) ctsP 1567670..1568278 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  WHP79_RS07930 (WHP79_07930) ctsD 1568271..1569683 (-) 1413 WP_032590707.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHP79_RS07935 (WHP79_07935) ctsR 1569661..1569972 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45746.29 Da        Isoelectric Point: 9.2580

>NTDB_id=952945 WHP79_RS07910 WP_002860343.1 1564352..1565533(-) (ctsF) [Campylobacter jejuni strain Z1323CCJ0052]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGTSLPFITHAMLEIYNFLDDYGIFCIFLFVIFNVMLILAYKNFHSFAFSCDF
LFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFINSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=952945 WHP79_RS07910 WP_002860343.1 1564352..1565533(-) (ctsF) [Campylobacter jejuni strain Z1323CCJ0052]
ATGAAATTTTATGAAGTGGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCACTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCACGAGTTTACCTTTTATCACGCATGCAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTAATGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAATACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAAATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTATTTTCTATGCTTAGCGTTGCGATGAAAAGTGGAAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGTGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

97.959

99.746

0.977