Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   WHP79_RS07925 Genome accession   NZ_CP148221
Coordinates   1567670..1568278 (-) Length   202 a.a.
NCBI ID   WP_002851464.1    Uniprot ID   A0AB36GA54
Organism   Campylobacter jejuni strain Z1323CCJ0052     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1562670..1573278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP79_RS07900 (WHP79_07900) - 1562829..1563591 (+) 763 Protein_1541 TIGR02757 family protein -
  WHP79_RS07905 (WHP79_07905) - 1563595..1564359 (+) 765 WP_070309136.1 TSUP family transporter -
  WHP79_RS07910 (WHP79_07910) ctsF 1564352..1565533 (-) 1182 WP_002860343.1 type II secretion system F family protein Machinery gene
  WHP79_RS07915 (WHP79_07915) ctsE 1565530..1567089 (-) 1560 WP_002858863.1 GspE/PulE family protein Machinery gene
  WHP79_RS07920 (WHP79_07920) ctsX 1567079..1567666 (-) 588 WP_002858864.1 hypothetical protein Machinery gene
  WHP79_RS07925 (WHP79_07925) ctsP 1567670..1568278 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  WHP79_RS07930 (WHP79_07930) ctsD 1568271..1569683 (-) 1413 WP_032590707.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHP79_RS07935 (WHP79_07935) ctsR 1569661..1569972 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23742.78 Da        Isoelectric Point: 9.9955

>NTDB_id=952948 WHP79_RS07925 WP_002851464.1 1567670..1568278(-) (ctsP) [Campylobacter jejuni strain Z1323CCJ0052]
MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILD
EVGMYDYAMLESIRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=952948 WHP79_RS07925 WP_002851464.1 1567670..1568278(-) (ctsP) [Campylobacter jejuni strain Z1323CCJ0052]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGTGGTAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGGTCAGAGTTTAATCATTCTTGAT
GAAGTGGGAATGTATGATTATGCAATGCTAGAAAGCATCAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTAAATTGAAAAATATTAGTCTTT
TAGAACTTGATGATTATATTAAATTGAAATTTGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTACAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATAAAAACAAAAGTCA
AGAGTATATTTTAAAGCTTAGTGCTTTAGAGAATGGCTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

99.505

100

0.995