Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   ACH6FY_RS03640 Genome accession   NZ_CP172382
Coordinates   676999..678972 (-) Length   657 a.a.
NCBI ID   WP_002864735.1    Uniprot ID   -
Organism   Campylobacter jejuni strain YH006     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 671999..683972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FY_RS03625 (ACH6FY_03625) kdpB 672419..674460 (+) 2042 Protein_703 potassium-transporting ATPase subunit KdpB -
  ACH6FY_RS03630 (ACH6FY_03630) kdpC 674462..675070 (+) 609 WP_139896998.1 potassium-transporting ATPase subunit KdpC -
  ACH6FY_RS03635 (ACH6FY_03635) kdpD 675073..677004 (+) 1932 WP_002907893.1 sensor histidine kinase KdpD -
  ACH6FY_RS03640 (ACH6FY_03640) uvrB 676999..678972 (-) 1974 WP_002864735.1 excinuclease ABC subunit UvrB Machinery gene
  ACH6FY_RS03645 (ACH6FY_03645) - 679126..679356 (+) 231 WP_395766381.1 hypothetical protein -
  ACH6FY_RS03650 (ACH6FY_03650) - 679346..679588 (+) 243 WP_002854947.1 hypothetical protein -
  ACH6FY_RS03655 (ACH6FY_03655) Cj0683 679585..680022 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ACH6FY_RS03660 (ACH6FY_03660) priA 680004..681857 (+) 1854 WP_002866530.1 primosomal protein N' -
  ACH6FY_RS03665 (ACH6FY_03665) cipA 681867..683261 (-) 1395 WP_011812728.1 DUF2972 domain-containing protein -

Sequence

Protein


Download         Length: 657 a.a.        Molecular weight: 75909.47 Da        Isoelectric Point: 6.8869

>NTDB_id=952848 ACH6FY_RS03640 WP_002864735.1 676999..678972(-) (uvrB) [Campylobacter jejuni strain YH006]
MLELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNIPTLIMSHNKSLCAQLYSEFKGFFSK
NHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRLSATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFEL
GMQISQKELLKKLVDMGYKRNDNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFIL
YPTSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCKGVENYARHLTGLKEGDTPY
TLFDYFAIKDRKFLVIVDESHVSLPQFRGMFAGDRSRKQTLVDYGFRLPSALDNRPLMFDEFIHKNCQFLFVSATPAPLE
LELSKENIFHQIMRPTGLLDPLIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHSDI
DAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRAARNVNGKVLLFCKKITKS
MQEAMDTTNERRKLQMAYNKKHNITPTSVKRHIEESLKNEEDLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALE
FEKAAAIRDEINKLRDL

Nucleotide


Download         Length: 1974 bp        

>NTDB_id=952848 ACH6FY_RS03640 WP_002864735.1 676999..678972(-) (uvrB) [Campylobacter jejuni strain YH006]
ATGTTAGAACTTACCAGCGAATTTAAACCCAGTCCCGATCAACAAGAAGCCATAAAAGGCATAGTAAAAAGTATAAAAAA
AGGCAACAAATATCAAACTTTACTAGGCGTTACAGGAAGTGGAAAAACCTTTACCATGGCAAATGTCATTAAAGAACTTA
ATATACCTACTCTTATCATGAGTCACAACAAAAGCCTTTGCGCTCAACTTTATAGCGAATTTAAAGGCTTTTTTTCTAAA
AATCATGTGGAATATTTTATATCTTATTATGATTATTATCAACCTGAAGCCTATATCCCACGCACTGATGTTTTCATAGA
AAAAGACAGCTCGACTAATGAAGACTTAGAGCGTTTAAGACTGAGTGCTACTGCTTCACTTTTAAGTTATGAAGATGTAG
TTTGCATAGCTAGTGTTTCAGCAAATTATGGACTTGGTAATCCAAATGAATACATAGGCATGGTTTTAATCTTTGAACTA
GGTATGCAAATTTCACAAAAAGAACTTTTAAAAAAACTTGTAGATATGGGTTATAAAAGAAATGATAATTTTTTTGATCG
TGCGGATTTTAGAGTTCAAGGAGATATTATAGACATTTATCCAGCTTATTATGAAGATGAAGTGGTAAGACTTGAATTTT
TTGGCGATGAGCTTGATGCTATGTATCATTACAATGTTTTAGAAAATAAAAAAGGCAAAGATTTAAAACGCTTTATACTC
TATCCTACAAGCCAGTTTAGCGTGGGCGAAACAAGATTAAAACAAGCGATAAAAGATATCAAAGCAGAACTTAACGAACG
CCTTGCTTATTTTGAACATGAAAATAAACTCGTAGAATATCAACGCCTTAAACAAAGGGTTGAATTTGATCTTGAAATGC
TTACAAGCACAGGAATGTGTAAAGGAGTTGAAAACTATGCAAGGCATTTAACAGGACTTAAAGAAGGTGATACTCCTTAT
ACGCTTTTTGATTATTTTGCGATTAAAGATAGAAAATTTCTTGTTATAGTCGATGAAAGCCATGTATCTTTACCACAATT
TAGAGGTATGTTTGCAGGAGATAGAAGCAGAAAACAAACCTTGGTGGATTATGGTTTTCGTTTGCCTTCAGCCTTGGATA
ACCGTCCTTTAATGTTTGATGAATTTATCCATAAAAATTGTCAATTTCTTTTTGTTTCAGCCACACCTGCACCTTTAGAA
CTTGAACTGAGTAAAGAAAACATCTTTCATCAAATCATGCGTCCTACAGGACTGCTTGATCCTTTAATAGAATTAAAAGA
TAGTGATAATCAGGTTGAAATTTTATTTGATGAGGCTAAAAAAGTCATACAAAGGAATGAACGTGTTTTAGTGACTGTGC
TAACTAAAAAACTCGCTGAAGAACTTACAAGGTATTATTTAGAGCTTGGTATAAAAGTCAAATACATGCACTCAGACATC
GATGCTATAGAACGCAATGAAATCATAAGAGGTTTAAGAAGCGGTGCTTTTGATATGCTAATTGGCATTAACTTACTTAG
AGAAGGACTAGATCTACCTGAAGTTTCACTCATTGCCATTATGGATGCAGATAAGGAAGGATTTTTAAGAAGCACTACAA
GTTTAATCCAAACCATGGGAAGAGCAGCTAGAAATGTCAATGGTAAGGTTTTGCTTTTTTGCAAAAAAATCACAAAATCC
ATGCAAGAAGCTATGGATACCACCAATGAACGCCGCAAACTTCAAATGGCTTATAATAAAAAACACAATATCACGCCAAC
TTCAGTCAAACGCCATATTGAAGAGAGTTTGAAAAATGAAGAGGATTTAGGCGAAATTTATCGCAAAGGTAAAAAACTAG
AAAAAATGCCTGCTAGCGAAAGAGCTAAACTTGTCAAAGAGTTAAGAAAACAAATGCTTGAAGCAGCTAAAGCACTTGAG
TTTGAAAAAGCTGCTGCTATTAGAGATGAGATTAATAAATTAAGGGATTTATAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(623-656)

Ultra-violet resistance protein B (UvrB)

(552-593)

UvrB interaction domain (UvrB_inter)

(158-246)

Type III restriction enzyme, res subunit (ResIII)

(8-116)

Helicase conserved C-terminal domain (Helicase_C)

(439-544)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

51.08

98.63

0.504
  uvrB Streptococcus pneumoniae TIGR4

51.08

98.63

0.504
  uvrB Streptococcus pneumoniae D39

51.08

98.63

0.504