Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   ACH6FG_RS03330 Genome accession   NZ_CP172381
Coordinates   643044..645017 (-) Length   657 a.a.
NCBI ID   WP_002872078.1    Uniprot ID   -
Organism   Campylobacter jejuni strain YH007     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 638044..650017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FG_RS03310 (ACH6FG_03310) kdpB 638476..640521 (+) 2046 WP_002890143.1 potassium-transporting ATPase subunit KdpB -
  ACH6FG_RS03315 (ACH6FG_03315) - 640557..641120 (+) 564 Protein_641 potassium-transporting ATPase subunit C -
  ACH6FG_RS03320 (ACH6FG_03320) - 641123..642274 (+) 1152 WP_236343219.1 sensor histidine kinase KdpD -
  ACH6FG_RS03325 (ACH6FG_03325) - 642298..642942 (+) 645 WP_236343220.1 DUF4118 domain-containing protein -
  ACH6FG_RS03330 (ACH6FG_03330) uvrB 643044..645017 (-) 1974 WP_002872078.1 excinuclease ABC subunit UvrB Machinery gene
  ACH6FG_RS03335 (ACH6FG_03335) - 645171..645401 (+) 231 WP_002852327.1 hypothetical protein -
  ACH6FG_RS03340 (ACH6FG_03340) - 645391..645633 (+) 243 WP_002854947.1 hypothetical protein -
  ACH6FG_RS03345 (ACH6FG_03345) Cj0683 645630..646067 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ACH6FG_RS03350 (ACH6FG_03350) priA 646049..647902 (+) 1854 WP_002872079.1 primosomal protein N' -
  ACH6FG_RS03355 (ACH6FG_03355) cipA 647912..649307 (-) 1396 Protein_649 DUF2972 domain-containing protein -

Sequence

Protein


Download         Length: 657 a.a.        Molecular weight: 75934.52 Da        Isoelectric Point: 7.0157

>NTDB_id=952801 ACH6FG_RS03330 WP_002872078.1 643044..645017(-) (uvrB) [Campylobacter jejuni strain YH007]
MLELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNIPTLIMSHNKSLCAQLYSEFKGFFSK
NHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRLSATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFEL
GMQISQKELLKKLVDMGYKRNDNFFNRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFIL
YPTSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCKGVENYARHLTGLKEGDTPY
TLFDYFAIKDRKFLVIVDESHVSLPQFRGMFAGDRSRKQTLVDYGFRLPSALDNRPLMFDEFIHKNCQFLFVSATPAPLE
LELSKENIFHQIMRPTGLLDPLIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHSDI
DAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRAARNVNGKVLLFCKKITKS
MQEAMDTTNERRKLQMAYNKKYNITPTSVKRHIEESLKNEEDLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALE
FEKAAAIRDEINKLRDL

Nucleotide


Download         Length: 1974 bp        

>NTDB_id=952801 ACH6FG_RS03330 WP_002872078.1 643044..645017(-) (uvrB) [Campylobacter jejuni strain YH007]
ATGTTAGAACTTACCAGCGAATTTAAACCCAGTCCCGATCAACAAGAAGCCATAAAAGGCATAGTAAAAAGCATAAAAAA
AGGCAACAAATATCAAACCTTACTAGGCGTTACAGGAAGTGGAAAAACCTTTACCATGGCAAATGTCATTAAAGAACTTA
ATATACCCACTCTTATCATGAGTCACAACAAAAGCCTTTGTGCACAACTTTATAGCGAATTTAAAGGCTTTTTTTCTAAA
AATCATGTGGAATATTTTATATCTTATTATGATTATTATCAACCTGAAGCCTATATCCCACGCACTGATGTTTTCATAGA
AAAAGATAGCTCTACTAATGAAGACTTAGAGCGTTTAAGACTGAGTGCTACTGCTTCTCTTTTAAGTTATGAAGATGTAG
TTTGCATAGCTAGTGTTTCGGCAAATTATGGACTTGGTAATCCAAATGAATACATAGGCATGGTTTTAATCTTTGAACTA
GGTATGCAAATTTCACAAAAAGAACTTTTAAAAAAACTTGTAGATATGGGTTATAAAAGAAATGATAATTTTTTTAATCG
TGCAGATTTTAGAGTTCAAGGAGATATTATAGATATTTATCCAGCTTATTATGAAGATGAAGTAGTAAGACTTGAATTTT
TTGGCGATGAGCTTGATGCTATGTATCATTACAATGTTTTAGAAAATAAAAAAGGTAAAGATTTAAAACGCTTCATACTC
TATCCTACAAGCCAGTTTAGCGTGGGCGAAACAAGATTAAAACAAGCGATAAAAGACATAAAAGCAGAACTTAACGAACG
CCTTGCTTATTTTGAACATGAAAATAAACTCGTAGAATATCAACGCCTTAAACAACGGGTTGAATTTGATCTTGAAATGC
TTACAAGCACAGGAATGTGTAAAGGAGTTGAAAACTATGCAAGGCATTTAACAGGACTTAAAGAAGGTGATACTCCTTAT
ACGCTTTTTGATTATTTTGCGATTAAAGATAGAAAATTTCTTGTTATAGTCGATGAAAGCCATGTATCTTTACCACAATT
TAGAGGTATGTTTGCAGGAGATAGAAGCAGAAAACAAACCTTGGTGGATTATGGTTTTCGTTTGCCTTCAGCCTTGGATA
ACCGTCCTTTAATGTTTGATGAATTTATCCATAAAAATTGTCAATTTCTTTTTGTTTCAGCCACACCTGCACCTTTAGAA
CTTGAACTTAGCAAAGAAAACATCTTTCATCAAATCATGCGTCCTACGGGACTGCTTGATCCTTTGATAGAATTAAAAGA
TAGTGATAATCAGGTTGAAATTTTATTTGATGAGGCTAAAAAAGTCATACAAAGAAACGAACGGGTTTTAGTAACTGTAC
TGACTAAAAAACTCGCTGAAGAGCTTACAAGGTATTATTTAGAGCTTGGTATAAAAGTCAAATACATGCACTCAGATATC
GATGCTATAGAACGCAATGAAATCATAAGAGGTTTAAGAAGCGGTGCTTTTGATATGCTAATTGGCATTAACTTACTTAG
AGAAGGACTTGATTTGCCTGAAGTTTCACTCATTGCCATTATGGATGCAGATAAGGAAGGCTTTTTAAGAAGTACTACAA
GTTTAATCCAAACCATGGGAAGAGCAGCTAGAAATGTCAATGGTAAGGTTTTGCTTTTTTGCAAAAAGATTACAAAATCT
ATGCAAGAAGCTATGGATACTACCAATGAACGCCGCAAACTTCAAATGGCTTATAATAAAAAATACAATATCACGCCAAC
TTCAGTCAAACGCCATATTGAAGAAAGTTTGAAAAATGAAGAGGATTTAGGCGAAATTTATCGCAAAGGTAAAAAACTAG
AAAAAATGCCTGCTAGCGAAAGAGCAAAACTTGTCAAAGAATTAAGAAAACAAATGCTTGAAGCAGCTAAAGCACTTGAG
TTTGAAAAAGCTGCTGCTATTAGAGATGAGATTAATAAATTAAGGGATTTATAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(623-656)

Type III restriction enzyme, res subunit (ResIII)

(8-116)

Ultra-violet resistance protein B (UvrB)

(552-593)

UvrB interaction domain (UvrB_inter)

(158-246)

Helicase conserved C-terminal domain (Helicase_C)

(439-544)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

50.926

98.63

0.502
  uvrB Streptococcus pneumoniae TIGR4

50.926

98.63

0.502
  uvrB Streptococcus pneumoniae D39

50.926

98.63

0.502