Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACH6FG_RS03125 Genome accession   NZ_CP172381
Coordinates   604265..605038 (+) Length   257 a.a.
NCBI ID   WP_002906182.1    Uniprot ID   -
Organism   Campylobacter jejuni strain YH007     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 599265..610038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FG_RS03110 (ACH6FG_03110) - 600114..602048 (-) 1935 WP_002852122.1 ribonuclease R family protein -
  ACH6FG_RS03115 (ACH6FG_03115) ilvC 602167..603189 (+) 1023 WP_002852218.1 ketol-acid reductoisomerase -
  ACH6FG_RS03120 (ACH6FG_03120) - 603193..604275 (+) 1083 WP_002864866.1 divergent polysaccharide deacetylase family protein -
  ACH6FG_RS03125 (ACH6FG_03125) dprA 604265..605038 (+) 774 WP_002906182.1 DNA-processing protein DprA Machinery gene
  ACH6FG_RS03130 (ACH6FG_03130) dprB 605035..605418 (+) 384 WP_002858579.1 Holliday junction resolvase RuvX Machinery gene
  ACH6FG_RS03135 (ACH6FG_03135) - 605447..606286 (+) 840 WP_010891872.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  ACH6FG_RS03140 (ACH6FG_03140) msrA 606462..606959 (-) 498 WP_002858555.1 peptide-methionine (S)-S-oxide reductase MsrA -
  ACH6FG_RS03145 (ACH6FG_03145) ppa 607000..607518 (-) 519 WP_002852138.1 inorganic diphosphatase -
  ACH6FG_RS03150 (ACH6FG_03150) adk 607528..608106 (-) 579 WP_002906185.1 adenylate kinase -
  ACH6FG_RS03155 (ACH6FG_03155) aspS 608103..609854 (-) 1752 WP_002871806.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28828.67 Da        Isoelectric Point: 7.0853

>NTDB_id=952799 ACH6FG_RS03125 WP_002906182.1 604265..605038(+) (dprA) [Campylobacter jejuni strain YH007]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTATNLLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=952799 ACH6FG_RS03125 WP_002906182.1 604265..605038(+) (dprA) [Campylobacter jejuni strain YH007]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGACTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGCAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGCAACTAATTTGCT
TTTAAAGGAAAATAAAGCAAAATTGATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAATTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

99.222

100

0.992
  dprA Helicobacter pylori 26695

48.75

93.385

0.455