Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   WHP61_RS02550 Genome accession   NZ_CP148214
Coordinates   477752..478933 (+) Length   393 a.a.
NCBI ID   WP_002873600.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0059     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 472752..483933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP61_RS02525 (WHP61_02525) ctsR 473313..473624 (+) 312 WP_002855438.1 hypothetical protein Machinery gene
  WHP61_RS02530 (WHP61_02530) ctsD 473602..475014 (+) 1413 WP_002871859.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHP61_RS02535 (WHP61_02535) ctsP 475007..475615 (+) 609 WP_052789524.1 ATP-binding protein Machinery gene
  WHP61_RS02540 (WHP61_02540) ctsX 475619..476206 (+) 588 WP_002867245.1 hypothetical protein Machinery gene
  WHP61_RS02545 (WHP61_02545) ctsE 476196..477755 (+) 1560 WP_020836902.1 GspE/PulE family protein Machinery gene
  WHP61_RS02550 (WHP61_02550) ctsF 477752..478933 (+) 1182 WP_002873600.1 type II secretion system F family protein Machinery gene
  WHP61_RS02555 (WHP61_02555) - 478920..479690 (-) 771 WP_002873601.1 TSUP family transporter -
  WHP61_RS02560 (WHP61_02560) - 479694..480458 (-) 765 WP_002868230.1 TIGR02757 family protein -
  WHP61_RS02565 (WHP61_02565) flgK 480475..482301 (-) 1827 WP_002873603.1 flagellar hook-associated protein FlgK -
  WHP61_RS02570 (WHP61_02570) - 482311..482745 (-) 435 WP_002779263.1 flagellar protein FlgN -
  WHP61_RS02575 (WHP61_02575) flgM 482788..482985 (-) 198 WP_002872343.1 flagellar biosynthesis anti-sigma factor FlgM -
  WHP61_RS02580 (WHP61_02580) flgJ 483048..483389 (-) 342 WP_070290117.1 rod-binding protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45731.32 Da        Isoelectric Point: 8.8959

>NTDB_id=952799 WHP61_RS02550 WP_002873600.1 477752..478933(+) (ctsF) [Campylobacter jejuni strain Z1323CCJ0059]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFD

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=952799 WHP61_RS02550 WP_002873600.1 477752..478933(+) (ctsF) [Campylobacter jejuni strain Z1323CCJ0059]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCACTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGCGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGTGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTGACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.98

99.746

0.987