Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   WHP61_RS02540 Genome accession   NZ_CP148214
Coordinates   475619..476206 (+) Length   195 a.a.
NCBI ID   WP_002867245.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0059     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 470619..481206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP61_RS02525 (WHP61_02525) ctsR 473313..473624 (+) 312 WP_002855438.1 hypothetical protein Machinery gene
  WHP61_RS02530 (WHP61_02530) ctsD 473602..475014 (+) 1413 WP_002871859.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHP61_RS02535 (WHP61_02535) ctsP 475007..475615 (+) 609 WP_052789524.1 ATP-binding protein Machinery gene
  WHP61_RS02540 (WHP61_02540) ctsX 475619..476206 (+) 588 WP_002867245.1 hypothetical protein Machinery gene
  WHP61_RS02545 (WHP61_02545) ctsE 476196..477755 (+) 1560 WP_020836902.1 GspE/PulE family protein Machinery gene
  WHP61_RS02550 (WHP61_02550) ctsF 477752..478933 (+) 1182 WP_002873600.1 type II secretion system F family protein Machinery gene
  WHP61_RS02555 (WHP61_02555) - 478920..479690 (-) 771 WP_002873601.1 TSUP family transporter -
  WHP61_RS02560 (WHP61_02560) - 479694..480458 (-) 765 WP_002868230.1 TIGR02757 family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 23354.40 Da        Isoelectric Point: 9.8409

>NTDB_id=952797 WHP61_RS02540 WP_002867245.1 475619..476206(+) (ctsX) [Campylobacter jejuni strain Z1323CCJ0059]
MQERIKELELRYKYFLLKKYLKYLLLVILISVIAFCFFVLMQKYNKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISRE
KLYKELEEVKAVQENTHISKIEIDSKILNISDLKKSFYQNPNYEKALNLAKKYFDIKAYQKTIFWALKANELDKQKQDSW
LIFAQAKRALGEEKEAQSALDAYINYYGLIELDGK

Nucleotide


Download         Length: 588 bp        

>NTDB_id=952797 WHP61_RS02540 WP_002867245.1 475619..476206(+) (ctsX) [Campylobacter jejuni strain Z1323CCJ0059]
ATGCAAGAAAGAATTAAAGAGCTTGAGCTTAGGTATAAATACTTTTTACTTAAAAAATATTTAAAATATTTATTGTTAGT
TATTTTAATATCAGTTATAGCATTTTGTTTTTTTGTGCTAATGCAAAAATATAATAAGCAAAAAAATATTTATTTGCAAG
CTATTGAACATAAAAAGCATTTAGAGCAAAAGATTCTTCAAGCGCAAATTTTACAAGAAAAAAATAAGATTTCTAGGGAA
AAGTTATATAAAGAACTAGAAGAAGTTAAAGCGGTGCAGGAAAATACACATATTAGTAAGATAGAAATTGATTCTAAAAT
TTTAAATATTTCTGATTTAAAAAAATCTTTTTATCAAAATCCAAACTATGAAAAGGCATTAAATTTAGCTAAGAAGTATT
TTGATATTAAAGCTTATCAAAAGACAATATTTTGGGCTTTAAAAGCCAATGAACTTGACAAGCAAAAACAAGATTCTTGG
CTGATTTTTGCTCAGGCTAAAAGAGCTTTAGGCGAAGAAAAAGAAGCTCAAAGTGCTTTAGATGCTTATATAAATTATTA
TGGTTTAATTGAATTAGATGGAAAGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

98.462

100

0.985