Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   WHP61_RS02525 Genome accession   NZ_CP148214
Coordinates   473313..473624 (+) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain Z1323CCJ0059     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 468313..478624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP61_RS02515 (WHP61_02515) - 468995..469636 (+) 642 WP_002869785.1 HAD family hydrolase -
  WHP61_RS02520 (WHP61_02520) nifJ 469729..473289 (+) 3561 WP_002899087.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  WHP61_RS02525 (WHP61_02525) ctsR 473313..473624 (+) 312 WP_002855438.1 hypothetical protein Machinery gene
  WHP61_RS02530 (WHP61_02530) ctsD 473602..475014 (+) 1413 WP_002871859.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHP61_RS02535 (WHP61_02535) ctsP 475007..475615 (+) 609 WP_052789524.1 ATP-binding protein Machinery gene
  WHP61_RS02540 (WHP61_02540) ctsX 475619..476206 (+) 588 WP_002867245.1 hypothetical protein Machinery gene
  WHP61_RS02545 (WHP61_02545) ctsE 476196..477755 (+) 1560 WP_020836902.1 GspE/PulE family protein Machinery gene

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=952794 WHP61_RS02525 WP_002855438.1 473313..473624(+) (ctsR) [Campylobacter jejuni strain Z1323CCJ0059]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=952794 WHP61_RS02525 WP_002855438.1 473313..473624(+) (ctsR) [Campylobacter jejuni strain Z1323CCJ0059]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1