Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   WHQ12_RS08265 Genome accession   NZ_CP148213
Coordinates   1533900..1535084 (+) Length   394 a.a.
NCBI ID   WP_002780434.1    Uniprot ID   A0A0U3A9V8
Organism   Campylobacter jejuni strain Z1323CCJ0062     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1528900..1540084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ12_RS08255 (WHQ12_08255) - 1529934..1531853 (+) 1920 WP_011049978.1 hypothetical protein -
  WHQ12_RS08260 (WHQ12_08260) kpsC 1531831..1533903 (+) 2073 WP_002867280.1 capsular polysaccharide biosynthesis protein -
  WHQ12_RS08265 (WHQ12_08265) kpsS 1533900..1535084 (+) 1185 WP_002780434.1 capsule polysaccharide modification protein KpsS Regulator
  WHQ12_RS08270 (WHQ12_08270) - 1535157..1536278 (+) 1122 WP_002780436.1 hypothetical protein -
  WHQ12_RS08275 (WHQ12_08275) - 1536275..1537636 (+) 1362 WP_002780438.1 cytochrome P450 -
  WHQ12_RS08280 (WHQ12_08280) - 1537633..1538052 (+) 420 WP_002780440.1 hypothetical protein -
  WHQ12_RS08285 (WHQ12_08285) acpS 1538053..1538400 (-) 348 WP_002780441.1 holo-ACP synthase -
  WHQ12_RS08290 (WHQ12_08290) fliL 1538400..1538936 (-) 537 WP_002780442.1 flagellar basal body-associated protein FliL -

Sequence

Protein


Download         Length: 394 a.a.        Molecular weight: 46824.57 Da        Isoelectric Point: 9.9369

>NTDB_id=952782 WHQ12_RS08265 WP_002780434.1 1533900..1535084(+) (kpsS) [Campylobacter jejuni strain Z1323CCJ0062]
MRFSTKIKKEFSGKNVLLLQGPVGNFFHHLAIKMKKKQTKVFKLNFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQSKKI
DAILMYNDCRIIHAKAIKVAKELGIEIWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKF
MAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIYNLEKKYFLAILQVYSDTQIKYH
YKKSIEHFIEETILSFANHARAKSYLVFKHHPMDRGYKNYSKLINDLSQKYHVEGRVLYVHDTHLPVLLRKALGCITINS
TVGLSAILEGCPTKVCGNAFYDFEGLSYPKKLQFFWREAHAYKPNPVLVCNFKKYLLQTNQFNGNFYKNFFLDK

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=952782 WHQ12_RS08265 WP_002780434.1 1533900..1535084(+) (kpsS) [Campylobacter jejuni strain Z1323CCJ0062]
ATGAGATTTAGCACTAAAATTAAAAAAGAATTTAGCGGTAAAAATGTTTTACTCTTGCAAGGACCTGTGGGAAATTTTTT
TCATCATCTTGCAATAAAAATGAAAAAAAAACAAACCAAAGTTTTTAAACTCAATTTTAACGGTGGAGATTTTTTTTTCT
ATCCTAGTGGAACGAGGTGTAAGTGCGATGAAAAAGATCTTGAAAATTTCTATAGAGATTTTTTTCAAAGCAAAAAAATC
GATGCTATTTTAATGTATAATGATTGTCGTATTATCCATGCTAAGGCTATTAAAGTGGCTAAAGAATTAGGAATTGAAAT
ATGGATTTTTGAAGAAGGATATTTAAGGCCTTATTGTATTACTTTGGAAAAAGATGGGGTGAATGCAAATTCTTCTTTAC
CGCGTGATAAAAATTTTTATCTTTCTCAAAATATTTTTACCAAAGAAAGCATAAAAGAAATTCCAGGTGGATTTAAATTT
ATGGCTTTTGATGCTTTTTTGTATTGGTTGTTTGCTTTTATTTTGGCTCCATTTTTTAACAACAAACTTCATCATCGCAC
TTTATATCCTTTTGAATTTTTATTTTGGTTTAGATCATTGTATAGAAAGTATCTTTATAAGATTACAGAAAAAAAACTAA
ATGAAAAGATTTATAATTTAGAAAAAAAGTACTTTTTGGCGATTTTACAAGTTTATAGCGATACGCAAATTAAATATCAT
TACAAAAAAAGCATAGAGCACTTTATAGAGGAAACCATACTTTCTTTTGCAAACCATGCAAGAGCTAAATCTTATCTAGT
TTTTAAACACCATCCCATGGATAGGGGCTATAAGAATTATTCTAAACTCATAAATGATTTAAGTCAAAAATATCATGTAG
AAGGAAGGGTTTTATATGTTCATGATACCCACTTGCCAGTTCTTTTAAGAAAGGCTTTGGGTTGTATTACTATAAATTCA
ACAGTAGGCCTTAGTGCTATTTTAGAAGGCTGTCCGACTAAGGTTTGTGGCAATGCTTTTTATGATTTTGAAGGCTTATC
TTATCCAAAAAAACTTCAATTTTTTTGGCGTGAAGCTCATGCTTATAAACCCAATCCTGTTTTGGTATGTAATTTTAAAA
AATATCTTTTACAAACTAATCAATTCAACGGCAATTTTTATAAAAATTTCTTTTTAGACAAATAA

Domains

Predicted by InterproScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(81-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0U3A9V8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.223

100

0.982