Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   WHQ12_RS08560 Genome accession   NZ_CP148213
Coordinates   1596967..1597935 (-) Length   322 a.a.
NCBI ID   WP_002867310.1    Uniprot ID   A0AAW5EG90
Organism   Campylobacter jejuni strain Z1323CCJ0062     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1591967..1602935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ12_RS08535 (WHQ12_08535) - 1593499..1594053 (+) 555 WP_002867306.1 membrane protein -
  WHQ12_RS08545 (WHQ12_08545) ceuB 1594279..1595271 (-) 993 WP_002867307.1 enterochelin ABC transporter substrate-binding protein CeuB -
  WHQ12_RS08550 (WHQ12_08550) ceuD 1595284..1596039 (-) 756 WP_002867308.1 ABC transporter ATP-binding protein -
  WHQ12_RS08555 (WHQ12_08555) ceuC 1596036..1596974 (-) 939 WP_002867309.1 iron chelate uptake ABC transporter family permease subunit -
  WHQ12_RS08560 (WHQ12_08560) ceuB 1596967..1597935 (-) 969 WP_002867310.1 ABC transporter permease Machinery gene
  WHQ12_RS08565 (WHQ12_08565) pldA 1598021..1599010 (-) 990 WP_002867311.1 phospholipase A -
  WHQ12_RS08570 (WHQ12_08570) mobA 1599007..1599582 (-) 576 WP_002867312.1 molybdenum cofactor guanylyltransferase -
  WHQ12_RS08575 (WHQ12_08575) - 1599644..1600951 (+) 1308 WP_002864240.1 NFACT family protein -
  WHQ12_RS08580 (WHQ12_08580) - 1600953..1601291 (+) 339 WP_002875268.1 hypothetical protein -
  WHQ12_RS08585 (WHQ12_08585) cdsA 1601300..1602025 (+) 726 WP_002884177.1 phosphatidate cytidylyltransferase -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35437.40 Da        Isoelectric Point: 9.6678

>NTDB_id=952784 WHQ12_RS08560 WP_002867310.1 1596967..1597935(-) (ceuB) [Campylobacter jejuni strain Z1323CCJ0062]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFTGASFFIQAIIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIIARLVIFPFEMPLSITTGVLGSLIFIFLLLKRKA
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=952784 WHQ12_RS08560 WP_002867310.1 1596967..1597935(-) (ceuB) [Campylobacter jejuni strain Z1323CCJ0062]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATCCTTAATCTTAACTCCACTCAACTAGAAATCATAACCCTTACAAGAATTCCTA
GACTTATAGCGATTTTACTCACAGGAATGAGTCTTAGTATATGCGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCTCCAACTACGGCAGGAACTATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTACTGGAGCATC
TTTTTTCATTCAAGCTATCATTGCTTCTATATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGCATTATTAGTGCTATAACCACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGCTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
ACTTTACATTTCTTTGCCACTTTTTATACTTGCTTATTTTTTAGCTCACAAAATCACCATAGTTGGCATGGGCGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGGATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGCTTAGTG
ATTGTAAGCGTTGGAATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTGCAAGACTTGTCATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTGCTAAAAAGGAAAGCT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

98.758

100

0.988