Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   WHQ12_RS08605 Genome accession   NZ_CP148213
Coordinates   1605493..1606008 (+) Length   171 a.a.
NCBI ID   WP_002868456.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0062     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1600493..1611008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ12_RS08580 (WHQ12_08580) - 1600953..1601291 (+) 339 WP_002875268.1 hypothetical protein -
  WHQ12_RS08585 (WHQ12_08585) cdsA 1601300..1602025 (+) 726 WP_002884177.1 phosphatidate cytidylyltransferase -
  WHQ12_RS08590 (WHQ12_08590) dxr 1602022..1603092 (+) 1071 WP_234729012.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  WHQ12_RS08595 (WHQ12_08595) - 1603094..1604488 (+) 1395 WP_002853606.1 M99 family carboxypeptidase catalytic domain-containing protein -
  WHQ12_RS08600 (WHQ12_08600) tsaD 1604485..1605492 (+) 1008 WP_002884179.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  WHQ12_RS08605 (WHQ12_08605) ctsG 1605493..1606008 (+) 516 WP_002868456.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  WHQ12_RS08610 (WHQ12_08610) - 1606008..1607243 (+) 1236 Protein_1668 DUF2920 family protein -
  WHQ12_RS08615 (WHQ12_08615) - 1607260..1609083 (+) 1824 WP_275054940.1 motility associated factor glycosyltransferase family protein -
  WHQ12_RS08620 (WHQ12_08620) - 1609080..1610897 (+) 1818 WP_338851160.1 motility associated factor glycosyltransferase family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18704.64 Da        Isoelectric Point: 6.4682

>NTDB_id=952785 WHQ12_RS08605 WP_002868456.1 1605493..1606008(+) (ctsG) [Campylobacter jejuni strain Z1323CCJ0062]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGILSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=952785 WHQ12_RS08605 WP_002868456.1 1605493..1606008(+) (ctsG) [Campylobacter jejuni strain Z1323CCJ0062]
ATGAAAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATCAACGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGTGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTTAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

93.567

100

0.936