Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACH6E8_RS05800 Genome accession   NZ_CP172380
Coordinates   1079430..1079978 (+) Length   182 a.a.
NCBI ID   WP_002890071.1    Uniprot ID   -
Organism   Campylobacter jejuni strain YH008     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1074430..1084978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6E8_RS05765 (ACH6E8_05765) - 1074620..1075045 (+) 426 WP_002890069.1 N-acetyltransferase -
  ACH6E8_RS05770 (ACH6E8_05770) - 1075109..1075729 (+) 621 WP_002856358.1 NAD(P)H-dependent oxidoreductase -
  ACH6E8_RS05775 (ACH6E8_05775) - 1075729..1076334 (+) 606 WP_002853045.1 NAD(P)H-dependent oxidoreductase -
  ACH6E8_RS05780 (ACH6E8_05780) pgsA 1076459..1076995 (+) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACH6E8_RS05785 (ACH6E8_05785) rseP 1076992..1078098 (+) 1107 WP_002852927.1 RIP metalloprotease RseP -
  ACH6E8_RS05790 (ACH6E8_05790) - 1078091..1078957 (+) 867 WP_002859152.1 VirK family antimicrobial peptide resistance protein -
  ACH6E8_RS05795 (ACH6E8_05795) rpsF 1079044..1079418 (+) 375 WP_002890070.1 30S ribosomal protein S6 -
  ACH6E8_RS05800 (ACH6E8_05800) ssb 1079430..1079978 (+) 549 WP_002890071.1 single-stranded DNA-binding protein Machinery gene
  ACH6E8_RS05805 (ACH6E8_05805) rpsR 1079989..1080249 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  ACH6E8_RS05810 (ACH6E8_05810) lon 1080309..1082684 (-) 2376 WP_002853487.1 endopeptidase La -
  ACH6E8_RS05815 (ACH6E8_05815) - 1082701..1083348 (-) 648 WP_069358670.1 outer membrane protein assembly factor BamD -
  ACH6E8_RS05820 (ACH6E8_05820) fliW 1083509..1083898 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  ACH6E8_RS05825 (ACH6E8_05825) proC 1083898..1084629 (+) 732 WP_002864259.1 pyrroline-5-carboxylate reductase Machinery gene
  ACH6E8_RS05830 (ACH6E8_05830) ctsT 1084626..1084928 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20594.53 Da        Isoelectric Point: 5.0431

>NTDB_id=952762 ACH6E8_RS05800 WP_002890071.1 1079430..1079978(+) (ssb) [Campylobacter jejuni strain YH008]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLAKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNVPQQGGFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNPQ
HEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=952762 ACH6E8_RS05800 WP_002890071.1 1079430..1079978(+) (ssb) [Campylobacter jejuni strain YH008]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTGCAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGTTCCACAACAAGGCGGTTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAAGCT
ATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCACAA
CACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.172

100

0.39
  ssb Vibrio cholerae strain A1552

37.5

96.703

0.363