Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   WHP75_RS07965 Genome accession   NZ_CP148203
Coordinates   1507672..1508259 (-) Length   195 a.a.
NCBI ID   WP_002867245.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0069     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1502672..1513259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP75_RS07945 (WHP75_07945) - 1503420..1504184 (+) 765 WP_002868230.1 TIGR02757 family protein -
  WHP75_RS07950 (WHP75_07950) - 1504188..1504958 (+) 771 WP_002873601.1 TSUP family transporter -
  WHP75_RS07955 (WHP75_07955) ctsF 1504945..1506126 (-) 1182 WP_002873600.1 type II secretion system F family protein Machinery gene
  WHP75_RS07960 (WHP75_07960) ctsE 1506123..1507682 (-) 1560 WP_020836902.1 GspE/PulE family protein Machinery gene
  WHP75_RS07965 (WHP75_07965) ctsX 1507672..1508259 (-) 588 WP_002867245.1 hypothetical protein Machinery gene
  WHP75_RS07970 (WHP75_07970) ctsP 1508263..1508871 (-) 609 WP_052789524.1 ATP-binding protein Machinery gene
  WHP75_RS07975 (WHP75_07975) ctsD 1508864..1510276 (-) 1413 WP_002871859.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHP75_RS07980 (WHP75_07980) ctsR 1510254..1510565 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 23354.40 Da        Isoelectric Point: 9.8409

>NTDB_id=952673 WHP75_RS07965 WP_002867245.1 1507672..1508259(-) (ctsX) [Campylobacter jejuni strain Z1323CCJ0069]
MQERIKELELRYKYFLLKKYLKYLLLVILISVIAFCFFVLMQKYNKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISRE
KLYKELEEVKAVQENTHISKIEIDSKILNISDLKKSFYQNPNYEKALNLAKKYFDIKAYQKTIFWALKANELDKQKQDSW
LIFAQAKRALGEEKEAQSALDAYINYYGLIELDGK

Nucleotide


Download         Length: 588 bp        

>NTDB_id=952673 WHP75_RS07965 WP_002867245.1 1507672..1508259(-) (ctsX) [Campylobacter jejuni strain Z1323CCJ0069]
ATGCAAGAAAGAATTAAAGAGCTTGAGCTTAGGTATAAATACTTTTTACTTAAAAAATATTTAAAATATTTATTGTTAGT
TATTTTAATATCAGTTATAGCATTTTGTTTTTTTGTGCTAATGCAAAAATATAATAAGCAAAAAAATATTTATTTGCAAG
CTATTGAACATAAAAAGCATTTAGAGCAAAAGATTCTTCAAGCGCAAATTTTACAAGAAAAAAATAAGATTTCTAGGGAA
AAGTTATATAAAGAACTAGAAGAAGTTAAAGCGGTGCAGGAAAATACACATATTAGTAAGATAGAAATTGATTCTAAAAT
TTTAAATATTTCTGATTTAAAAAAATCTTTTTATCAAAATCCAAACTATGAAAAGGCATTAAATTTAGCTAAGAAGTATT
TTGATATTAAAGCTTATCAAAAGACAATATTTTGGGCTTTAAAAGCCAATGAACTTGACAAGCAAAAACAAGATTCTTGG
CTGATTTTTGCTCAGGCTAAAAGAGCTTTAGGCGAAGAAAAAGAAGCTCAAAGTGCTTTAGATGCTTATATAAATTATTA
TGGTTTAATTGAATTAGATGGAAAGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

98.462

100

0.985