Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   WHP75_RS07980 Genome accession   NZ_CP148203
Coordinates   1510254..1510565 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain Z1323CCJ0069     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1505254..1515565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP75_RS07960 (WHP75_07960) ctsE 1506123..1507682 (-) 1560 WP_020836902.1 GspE/PulE family protein Machinery gene
  WHP75_RS07965 (WHP75_07965) ctsX 1507672..1508259 (-) 588 WP_002867245.1 hypothetical protein Machinery gene
  WHP75_RS07970 (WHP75_07970) ctsP 1508263..1508871 (-) 609 WP_052789524.1 ATP-binding protein Machinery gene
  WHP75_RS07975 (WHP75_07975) ctsD 1508864..1510276 (-) 1413 WP_002871859.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHP75_RS07980 (WHP75_07980) ctsR 1510254..1510565 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  WHP75_RS07985 (WHP75_07985) nifJ 1510589..1514149 (-) 3561 WP_002899087.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  WHP75_RS07990 (WHP75_07990) - 1514242..1514883 (-) 642 WP_002869785.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=952676 WHP75_RS07980 WP_002855438.1 1510254..1510565(-) (ctsR) [Campylobacter jejuni strain Z1323CCJ0069]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=952676 WHP75_RS07980 WP_002855438.1 1510254..1510565(-) (ctsR) [Campylobacter jejuni strain Z1323CCJ0069]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1