Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   WHP75_RS07955 Genome accession   NZ_CP148203
Coordinates   1504945..1506126 (-) Length   393 a.a.
NCBI ID   WP_002873600.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323CCJ0069     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1499945..1511126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP75_RS07925 (WHP75_07925) flgJ 1500489..1500830 (+) 342 WP_070290117.1 rod-binding protein -
  WHP75_RS07930 (WHP75_07930) flgM 1500893..1501090 (+) 198 WP_002872343.1 flagellar biosynthesis anti-sigma factor FlgM -
  WHP75_RS07935 (WHP75_07935) - 1501133..1501567 (+) 435 WP_002779263.1 flagellar protein FlgN -
  WHP75_RS07940 (WHP75_07940) flgK 1501577..1503403 (+) 1827 WP_002873603.1 flagellar hook-associated protein FlgK -
  WHP75_RS07945 (WHP75_07945) - 1503420..1504184 (+) 765 WP_002868230.1 TIGR02757 family protein -
  WHP75_RS07950 (WHP75_07950) - 1504188..1504958 (+) 771 WP_002873601.1 TSUP family transporter -
  WHP75_RS07955 (WHP75_07955) ctsF 1504945..1506126 (-) 1182 WP_002873600.1 type II secretion system F family protein Machinery gene
  WHP75_RS07960 (WHP75_07960) ctsE 1506123..1507682 (-) 1560 WP_020836902.1 GspE/PulE family protein Machinery gene
  WHP75_RS07965 (WHP75_07965) ctsX 1507672..1508259 (-) 588 WP_002867245.1 hypothetical protein Machinery gene
  WHP75_RS07970 (WHP75_07970) ctsP 1508263..1508871 (-) 609 WP_052789524.1 ATP-binding protein Machinery gene
  WHP75_RS07975 (WHP75_07975) ctsD 1508864..1510276 (-) 1413 WP_002871859.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHP75_RS07980 (WHP75_07980) ctsR 1510254..1510565 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45731.32 Da        Isoelectric Point: 8.8959

>NTDB_id=952671 WHP75_RS07955 WP_002873600.1 1504945..1506126(-) (ctsF) [Campylobacter jejuni strain Z1323CCJ0069]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFD

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=952671 WHP75_RS07955 WP_002873600.1 1504945..1506126(-) (ctsF) [Campylobacter jejuni strain Z1323CCJ0069]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCACTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGCGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGTGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTGACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.98

99.746

0.987