Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   WHP28_RS03340 Genome accession   NZ_CP148193
Coordinates   643585..644022 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain Z1323CCJ0075     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 638585..649022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP28_RS03320 (WHP28_03320) kdpD 639077..640897 (+) 1821 WP_002858538.1 sensor histidine kinase KdpD -
  WHP28_RS03325 (WHP28_03325) uvrB 640999..642972 (-) 1974 WP_002855027.1 excinuclease ABC subunit UvrB -
  WHP28_RS03330 (WHP28_03330) - 643126..643356 (+) 231 WP_002852327.1 hypothetical protein -
  WHP28_RS03335 (WHP28_03335) - 643346..643588 (+) 243 WP_002854947.1 hypothetical protein -
  WHP28_RS03340 (WHP28_03340) Cj0683 643585..644022 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  WHP28_RS03345 (WHP28_03345) priA 644004..645857 (+) 1854 WP_002852169.1 primosomal protein N' -
  WHP28_RS03350 (WHP28_03350) cipA 645867..647260 (-) 1394 Protein_648 DUF2972 domain-containing protein -
  WHP28_RS03355 (WHP28_03355) ispG 647408..648481 (+) 1074 WP_002852250.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=952522 WHP28_RS03340 WP_002852324.1 643585..644022(+) (Cj0683) [Campylobacter jejuni strain Z1323CCJ0075]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=952522 WHP28_RS03340 WP_002852324.1 643585..644022(+) (Cj0683) [Campylobacter jejuni strain Z1323CCJ0075]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCACAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1