Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   WHQ29_RS04030 Genome accession   NZ_CP148190
Coordinates   768102..768617 (+) Length   171 a.a.
NCBI ID   WP_002903863.1    Uniprot ID   A0AB36G830
Organism   Campylobacter jejuni strain Z1323CCJ0080     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 763102..773617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ29_RS04005 (WHQ29_04005) - 763562..763900 (+) 339 WP_002852397.1 hypothetical protein -
  WHQ29_RS04010 (WHQ29_04010) cdsA 763909..764634 (+) 726 WP_002889945.1 phosphatidate cytidylyltransferase -
  WHQ29_RS04015 (WHQ29_04015) dxr 764631..765701 (+) 1071 WP_002864243.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  WHQ29_RS04020 (WHQ29_04020) - 765703..767097 (+) 1395 WP_002869556.1 M99 family carboxypeptidase catalytic domain-containing protein -
  WHQ29_RS04025 (WHQ29_04025) tsaD 767094..768101 (+) 1008 WP_002889944.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  WHQ29_RS04030 (WHQ29_04030) ctsG 768102..768617 (+) 516 WP_002903863.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  WHQ29_RS04035 (WHQ29_04035) - 768617..769867 (+) 1251 WP_002903861.1 DUF2920 family protein -
  WHQ29_RS04040 (WHQ29_04040) - 769877..771697 (+) 1821 WP_257042789.1 motility associated factor glycosyltransferase family protein -
  WHQ29_RS04045 (WHQ29_04045) - 771697..773514 (+) 1818 WP_338877799.1 motility associated factor glycosyltransferase family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18734.63 Da        Isoelectric Point: 7.2439

>NTDB_id=952476 WHQ29_RS04030 WP_002903863.1 768102..768617(+) (ctsG) [Campylobacter jejuni strain Z1323CCJ0080]
MKKAFTILELVFVIVILGILAAIALPKMSSSKHEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYFLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=952476 WHQ29_RS04030 WP_002903863.1 768102..768617(+) (ctsG) [Campylobacter jejuni strain Z1323CCJ0080]
ATGAAAAAAGCTTTTACCATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGCAAGCATGAAGCCGAGGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTGAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATTTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.982

100

0.93