Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   WHP72_RS07730 Genome accession   NZ_CP148184
Coordinates   1490683..1490994 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain Z1323CCJ0088     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1485683..1495994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP72_RS07710 (WHP72_07710) ctsE 1486552..1488111 (-) 1560 WP_002867246.1 GspE/PulE family protein Machinery gene
  WHP72_RS07715 (WHP72_07715) ctsX 1488101..1488688 (-) 588 WP_002867245.1 hypothetical protein Machinery gene
  WHP72_RS07720 (WHP72_07720) ctsP 1488692..1489300 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  WHP72_RS07725 (WHP72_07725) ctsD 1489293..1490705 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHP72_RS07730 (WHP72_07730) ctsR 1490683..1490994 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  WHP72_RS07735 (WHP72_07735) nifJ 1491018..1494578 (-) 3561 WP_002877436.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  WHP72_RS07740 (WHP72_07740) - 1494671..1495312 (-) 642 WP_002867242.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=952432 WHP72_RS07730 WP_002855438.1 1490683..1490994(-) (ctsR) [Campylobacter jejuni strain Z1323CCJ0088]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=952432 WHP72_RS07730 WP_002855438.1 1490683..1490994(-) (ctsR) [Campylobacter jejuni strain Z1323CCJ0088]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1