Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   ACH6FI_RS04005 Genome accession   NZ_CP172364
Coordinates   704200..704583 (+) Length   127 a.a.
NCBI ID   WP_002852281.1    Uniprot ID   Q9PHN2
Organism   Campylobacter jejuni strain YH021     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 699200..709583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FI_RS03985 (ACH6FI_03985) - 699279..701213 (-) 1935 WP_395766475.1 RNB domain-containing ribonuclease -
  ACH6FI_RS03990 (ACH6FI_03990) ilvC 701332..702354 (+) 1023 WP_002852218.1 ketol-acid reductoisomerase -
  ACH6FI_RS03995 (ACH6FI_03995) - 702358..703440 (+) 1083 WP_002859983.1 divergent polysaccharide deacetylase family protein -
  ACH6FI_RS04000 (ACH6FI_04000) dprA 703430..704203 (+) 774 WP_070317309.1 DNA-processing protein DprA Machinery gene
  ACH6FI_RS04005 (ACH6FI_04005) dprB 704200..704583 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  ACH6FI_RS04010 (ACH6FI_04010) - 704612..705451 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  ACH6FI_RS04015 (ACH6FI_04015) msrA 705627..706124 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  ACH6FI_RS04020 (ACH6FI_04020) ppa 706166..706684 (-) 519 WP_002852138.1 inorganic diphosphatase -
  ACH6FI_RS04025 (ACH6FI_04025) adk 706694..707272 (-) 579 WP_032590860.1 adenylate kinase -
  ACH6FI_RS04030 (ACH6FI_04030) aspS 707269..709020 (-) 1752 WP_395766476.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14088.59 Da        Isoelectric Point: 9.5433

>NTDB_id=952429 ACH6FI_RS04005 WP_002852281.1 704200..704583(+) (dprB) [Campylobacter jejuni strain YH021]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=952429 ACH6FI_RS04005 WP_002852281.1 704200..704583(+) (dprB) [Campylobacter jejuni strain YH021]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PHN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449