Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   ACH6FI_RS04215 Genome accession   NZ_CP172364
Coordinates   742025..743998 (-) Length   657 a.a.
NCBI ID   WP_070316424.1    Uniprot ID   -
Organism   Campylobacter jejuni strain YH021     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 737025..748998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FI_RS04190 (ACH6FI_04190) - 737401..737619 (+) 219 WP_251813705.1 potassium-transporting ATPase subunit KdpA -
  ACH6FI_RS04195 (ACH6FI_04195) kdpB 737629..739494 (+) 1866 WP_071311252.1 potassium-transporting ATPase subunit KdpB -
  ACH6FI_RS04200 (ACH6FI_04200) kdpC 739496..740104 (+) 609 WP_395766477.1 potassium-transporting ATPase subunit KdpC -
  ACH6FI_RS04205 (ACH6FI_04205) - 740107..741258 (+) 1152 WP_234744381.1 sensor histidine kinase KdpD -
  ACH6FI_RS04210 (ACH6FI_04210) - 741282..741923 (+) 642 WP_234744382.1 DUF4118 domain-containing protein -
  ACH6FI_RS04215 (ACH6FI_04215) uvrB 742025..743998 (-) 1974 WP_070316424.1 excinuclease ABC subunit UvrB Machinery gene
  ACH6FI_RS04220 (ACH6FI_04220) - 744152..744382 (+) 231 WP_002852327.1 hypothetical protein -
  ACH6FI_RS04225 (ACH6FI_04225) - 744372..744614 (+) 243 WP_002854947.1 hypothetical protein -
  ACH6FI_RS04230 (ACH6FI_04230) Cj0683 744611..745048 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ACH6FI_RS04235 (ACH6FI_04235) priA 745030..746883 (+) 1854 WP_002908515.1 primosomal protein N' -
  ACH6FI_RS04240 (ACH6FI_04240) cipA 746893..748286 (-) 1394 Protein_826 DUF2972 domain-containing protein -

Sequence

Protein


Download         Length: 657 a.a.        Molecular weight: 75925.48 Da        Isoelectric Point: 6.8371

>NTDB_id=952430 ACH6FI_RS04215 WP_070316424.1 742025..743998(-) (uvrB) [Campylobacter jejuni strain YH021]
MLELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNMPTLIMSHNKSLCAQLYSEFKGFFSK
NHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRLSATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFEL
GMQISQKELLKKLVDMGYKRNDNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFIL
YPTSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCKGVENYARHLTGLKEGDTPY
TLFDYFAIKDRKFLVIVDESHVSLPQFRGMFAGDRSRKQTLVDYGFRLPSALDNRPLMFDEFIHKNCQFLFVSATPAPLE
LELSKENIFHQIMRPTGLLDPLIELKDSDNQVEILFDEAKKVIQRNERVLATVLTKKLAEELTRYYLELGIKVKYMHSDI
DAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRAARNVNGKVLLFCKKITKS
MQEAMDTTNERRKLQMAYNKKYNITPTSVKRHIEESLKNEEDLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALE
FEKAAAIRDEINKLRDL

Nucleotide


Download         Length: 1974 bp        

>NTDB_id=952430 ACH6FI_RS04215 WP_070316424.1 742025..743998(-) (uvrB) [Campylobacter jejuni strain YH021]
ATGTTAGAACTTACCAGCGAATTTAAACCTAGTCCTGATCAACAAGAAGCCATAAAAGGCATAGTAAAAAGTATAAAAAA
AGGCAATAAATATCAAACCTTACTAGGCGTTACAGGAAGTGGAAAAACCTTTACCATGGCAAATGTCATTAAAGAACTTA
ATATGCCCACTCTTATCATGAGTCACAACAAAAGCCTTTGTGCACAACTTTATAGCGAATTTAAAGGCTTTTTTTCTAAA
AATCATGTGGAATATTTTATATCTTATTATGATTATTATCAACCTGAAGCCTATATTCCACGCACTGATGTTTTCATAGA
AAAAGATAGCTCTACTAATGAAGACTTAGAGCGTTTAAGACTGAGTGCTACTGCTTCTCTTTTAAGTTATGAAGATGTAG
TTTGCATAGCTAGTGTTTCAGCAAATTATGGACTTGGTAATCCAAATGAATACATAGGCATGGTTTTAATCTTTGAACTA
GGTATGCAAATTTCACAAAAAGAACTTTTAAAAAAACTTGTAGATATGGGTTATAAAAGAAATGATAATTTTTTTGATCG
TGCAGATTTTAGAGTTCAAGGAGATATTATAGACATTTATCCAGCTTATTATGAAGATGAAGTAGTAAGACTTGAATTTT
TTGGCGATGAGCTTGATGCTATGTATCATTACAATGTTTTAGAAAATAAAAAAGGCAAAGATTTAAAACGCTTCATACTC
TATCCTACAAGCCAGTTTAGTGTAGGTGAAACAAGACTAAAACAAGCGATAAAAGACATAAAAGCAGAACTTAACGAACG
CCTTGCTTATTTTGAACATGAAAATAAACTCGTAGAATATCAACGCCTTAAACAAAGGGTTGAATTTGATCTTGAAATGC
TTACAAGCACAGGAATGTGTAAAGGAGTTGAAAACTATGCAAGGCATTTAACAGGACTTAAAGAAGGTGATACTCCTTAT
ACGCTTTTTGATTATTTTGCGATTAAAGATAGAAAATTTCTTGTTATAGTCGATGAAAGCCATGTATCTTTACCACAATT
TAGAGGTATGTTTGCAGGAGATAGAAGCAGAAAACAAACCTTGGTGGATTATGGTTTTCGTTTGCCTTCAGCCTTGGATA
ACCGTCCTTTAATGTTTGATGAATTTATCCATAAAAATTGTCAATTTCTTTTTGTTTCAGCCACACCTGCACCTTTAGAA
CTTGAACTGAGTAAAGAAAACATCTTTCATCAAATCATGCGTCCTACAGGACTGCTTGATCCTTTAATAGAGTTAAAAGA
TAGTGATAATCAGGTTGAAATTTTATTTGATGAGGCTAAAAAAGTCATACAAAGGAATGAACGTGTTTTAGCGACTGTGC
TAACTAAAAAACTCGCTGAAGAACTTACAAGGTATTATTTAGAGCTTGGTATAAAAGTCAAATACATGCACTCAGATATC
GATGCTATAGAACGCAATGAAATCATAAGAGGTTTAAGAAGCGGTGCTTTTGATATGCTAATTGGCATTAACTTACTTAG
AGAAGGACTTGATTTGCCTGAAGTTTCACTCATTGCCATTATGGATGCAGATAAGGAAGGCTTTTTAAGAAGTACTACAA
GTTTAATCCAAACCATGGGAAGAGCAGCTAGAAATGTCAATGGTAAGGTTTTGCTTTTTTGCAAAAAGATTACAAAATCT
ATGCAAGAAGCTATGGATACTACCAATGAACGCCGCAAACTTCAAATGGCTTATAATAAAAAATACAATATCACGCCAAC
TTCAGTCAAACGCCATATTGAAGAGAGTTTGAAAAATGAAGAGGATTTAGGCGAAATTTATCGCAAAGGTAAAAAACTCG
AAAAAATGCCTGCTAGTGAAAGAGCTAAACTTGTCAAAGAGTTAAGAAAACAAATGCTTGAAGCAGCTAAAGCACTTGAG
TTTGAAAAAGCTGCTGCTATTAGAGATGAGATTAATAAATTAAGGGATTTATAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(623-656)

UvrB interaction domain (UvrB_inter)

(158-246)

Helicase conserved C-terminal domain (Helicase_C)

(441-544)

Ultra-violet resistance protein B (UvrB)

(552-593)

Type III restriction enzyme, res subunit (ResIII)

(8-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

50.926

98.63

0.502
  uvrB Streptococcus pneumoniae D39

50.926

98.63

0.502
  uvrB Streptococcus pneumoniae TIGR4

50.926

98.63

0.502