Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   WHQ30_RS01450 Genome accession   NZ_CP148182
Coordinates   271406..271717 (+) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain Z1323CCJ0095     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 266406..276717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ30_RS01440 (WHQ30_01440) - 267088..267729 (+) 642 WP_002867242.1 HAD family hydrolase -
  WHQ30_RS01445 (WHQ30_01445) nifJ 267822..271382 (+) 3561 WP_002867243.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  WHQ30_RS01450 (WHQ30_01450) ctsR 271406..271717 (+) 312 WP_002855438.1 hypothetical protein Machinery gene
  WHQ30_RS01455 (WHQ30_01455) ctsD 271695..273107 (+) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHQ30_RS01460 (WHQ30_01460) ctsP 273100..273708 (+) 609 WP_002851464.1 ATP-binding protein Machinery gene
  WHQ30_RS01465 (WHQ30_01465) ctsX 273712..274299 (+) 588 WP_002867245.1 hypothetical protein Machinery gene
  WHQ30_RS01470 (WHQ30_01470) ctsE 274289..275848 (+) 1560 WP_338851157.1 GspE/PulE family protein Machinery gene

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=952353 WHQ30_RS01450 WP_002855438.1 271406..271717(+) (ctsR) [Campylobacter jejuni strain Z1323CCJ0095]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=952353 WHQ30_RS01450 WP_002855438.1 271406..271717(+) (ctsR) [Campylobacter jejuni strain Z1323CCJ0095]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1