Detailed information
Bioinformatically predicted
Overview
| Name | ctsT | Type | Machinery gene |
| Locus tag | WHP48_RS05350 | Genome accession | NZ_CP148173 |
| Coordinates | 1027218..1027520 (+) | Length | 100 a.a. |
| NCBI ID | WP_002853046.1 | Uniprot ID | Q0P9H7 |
| Organism | Campylobacter jejuni strain Z1323HCJ0022 | ||
| Function | type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1022218..1032520
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WHP48_RS05325 (WHP48_05325) | rpsR | 1022581..1022841 (+) | 261 | WP_002853032.1 | 30S ribosomal protein S18 | - |
| WHP48_RS05330 (WHP48_05330) | lon | 1022901..1025276 (-) | 2376 | WP_002852988.1 | endopeptidase La | - |
| WHP48_RS05335 (WHP48_05335) | - | 1025293..1025940 (-) | 648 | WP_002852961.1 | outer membrane protein assembly factor BamD | - |
| WHP48_RS05340 (WHP48_05340) | fliW | 1026101..1026490 (+) | 390 | WP_002852982.1 | flagellar assembly protein FliW | - |
| WHP48_RS05345 (WHP48_05345) | proC | 1026490..1027221 (+) | 732 | WP_002859150.1 | pyrroline-5-carboxylate reductase | Machinery gene |
| WHP48_RS05350 (WHP48_05350) | ctsT | 1027218..1027520 (+) | 303 | WP_002853046.1 | type II secretion system protein | Machinery gene |
| WHP48_RS05355 (WHP48_05355) | - | 1027517..1028179 (+) | 663 | WP_002858296.1 | hypothetical protein | - |
| WHP48_RS05360 (WHP48_05360) | - | 1028176..1028628 (+) | 453 | WP_002859148.1 | hypothetical protein | - |
| WHP48_RS05365 (WHP48_05365) | hemD | 1028625..1029254 (-) | 630 | WP_002852819.1 | uroporphyrinogen-III synthase | - |
| WHP48_RS05370 (WHP48_05370) | thiE | 1029232..1029864 (-) | 633 | WP_002852670.1 | thiamine phosphate synthase | - |
| WHP48_RS05375 (WHP48_05375) | thiD | 1029854..1030666 (-) | 813 | WP_338842138.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| WHP48_RS05380 (WHP48_05380) | - | 1030663..1031349 (-) | 687 | WP_002852847.1 | endonuclease III domain-containing protein | - |
| WHP48_RS05385 (WHP48_05385) | - | 1031346..1032107 (-) | 762 | WP_002852748.1 | ATP-binding protein | - |
Sequence
Protein
Download Length: 100 a.a. Molecular weight: 12162.27 Da Isoelectric Point: 6.2957
>NTDB_id=952198 WHP48_RS05350 WP_002853046.1 1027218..1027520(+) (ctsT) [Campylobacter jejuni strain Z1323HCJ0022]
MKKAFILIESISAITIISLIFIGIFYYYIQLYKNYENLNIFERLYKLQEELYEKPIFKTIILQTSALKPIVLQEQFVNDG
IFQFQKLYFQDQNYSVYFKE
MKKAFILIESISAITIISLIFIGIFYYYIQLYKNYENLNIFERLYKLQEELYEKPIFKTIILQTSALKPIVLQEQFVNDG
IFQFQKLYFQDQNYSVYFKE
Nucleotide
Download Length: 303 bp
>NTDB_id=952198 WHP48_RS05350 WP_002853046.1 1027218..1027520(+) (ctsT) [Campylobacter jejuni strain Z1323HCJ0022]
ATGAAAAAGGCTTTCATACTTATAGAAAGCATTAGTGCTATAACGATCATATCTTTAATTTTCATTGGCATTTTTTATTA
CTATATTCAACTTTACAAAAACTATGAAAATTTAAATATTTTTGAAAGACTCTATAAACTTCAAGAAGAATTATATGAAA
AGCCTATTTTTAAAACCATCATACTTCAAACTTCAGCCTTAAAACCTATAGTTTTACAAGAACAGTTTGTTAATGATGGT
ATATTTCAATTTCAAAAATTATACTTTCAAGATCAAAATTATAGCGTTTATTTTAAAGAATGA
ATGAAAAAGGCTTTCATACTTATAGAAAGCATTAGTGCTATAACGATCATATCTTTAATTTTCATTGGCATTTTTTATTA
CTATATTCAACTTTACAAAAACTATGAAAATTTAAATATTTTTGAAAGACTCTATAAACTTCAAGAAGAATTATATGAAA
AGCCTATTTTTAAAACCATCATACTTCAAACTTCAGCCTTAAAACCTATAGTTTTACAAGAACAGTTTGTTAATGATGGT
ATATTTCAATTTCAAAAATTATACTTTCAAGATCAAAATTATAGCGTTTATTTTAAAGAATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ctsT | Campylobacter jejuni subsp. jejuni 81-176 |
99 |
100 |
0.99 |