Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACH6FB_RS03050 Genome accession   NZ_CP172348
Coordinates   583226..583999 (+) Length   257 a.a.
NCBI ID   WP_002868431.1    Uniprot ID   -
Organism   Campylobacter jejuni strain YH030     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 578226..588999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FB_RS03035 (ACH6FB_03035) - 579075..581009 (-) 1935 WP_002870085.1 ribonuclease R family protein -
  ACH6FB_RS03040 (ACH6FB_03040) ilvC 581128..582150 (+) 1023 WP_002870086.1 ketol-acid reductoisomerase -
  ACH6FB_RS03045 (ACH6FB_03045) - 582154..583236 (+) 1083 WP_002859983.1 divergent polysaccharide deacetylase family protein -
  ACH6FB_RS03050 (ACH6FB_03050) dprA 583226..583999 (+) 774 WP_002868431.1 DNA-processing protein DprA Machinery gene
  ACH6FB_RS03055 (ACH6FB_03055) dprB 583996..584379 (+) 384 WP_002870088.1 Holliday junction resolvase RuvX Machinery gene
  ACH6FB_RS03060 (ACH6FB_03060) - 584408..585247 (+) 840 WP_079263627.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  ACH6FB_RS03065 (ACH6FB_03065) msrA 585423..585920 (-) 498 WP_002870090.1 peptide-methionine (S)-S-oxide reductase MsrA -
  ACH6FB_RS03070 (ACH6FB_03070) ppa 585961..586479 (-) 519 WP_002870091.1 inorganic diphosphatase -
  ACH6FB_RS03075 (ACH6FB_03075) adk 586489..587067 (-) 579 WP_002855137.1 adenylate kinase -
  ACH6FB_RS03080 (ACH6FB_03080) aspS 587064..588815 (-) 1752 WP_002870092.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28848.66 Da        Isoelectric Point: 7.0853

>NTDB_id=952014 ACH6FB_RS03050 WP_002868431.1 583226..583999(+) (dprA) [Campylobacter jejuni strain YH030]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=952014 ACH6FB_RS03050 WP_002868431.1 583226..583999(+) (dprA) [Campylobacter jejuni strain YH030]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAATTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.444

100

0.984
  dprA Helicobacter pylori 26695

49.167

93.385

0.459