Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   ACH6FB_RS03055 Genome accession   NZ_CP172348
Coordinates   583996..584379 (+) Length   127 a.a.
NCBI ID   WP_002870088.1    Uniprot ID   -
Organism   Campylobacter jejuni strain YH030     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 578996..589379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FB_RS03035 (ACH6FB_03035) - 579075..581009 (-) 1935 WP_002870085.1 ribonuclease R family protein -
  ACH6FB_RS03040 (ACH6FB_03040) ilvC 581128..582150 (+) 1023 WP_002870086.1 ketol-acid reductoisomerase -
  ACH6FB_RS03045 (ACH6FB_03045) - 582154..583236 (+) 1083 WP_002859983.1 divergent polysaccharide deacetylase family protein -
  ACH6FB_RS03050 (ACH6FB_03050) dprA 583226..583999 (+) 774 WP_002868431.1 DNA-processing protein DprA Machinery gene
  ACH6FB_RS03055 (ACH6FB_03055) dprB 583996..584379 (+) 384 WP_002870088.1 Holliday junction resolvase RuvX Machinery gene
  ACH6FB_RS03060 (ACH6FB_03060) - 584408..585247 (+) 840 WP_079263627.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  ACH6FB_RS03065 (ACH6FB_03065) msrA 585423..585920 (-) 498 WP_002870090.1 peptide-methionine (S)-S-oxide reductase MsrA -
  ACH6FB_RS03070 (ACH6FB_03070) ppa 585961..586479 (-) 519 WP_002870091.1 inorganic diphosphatase -
  ACH6FB_RS03075 (ACH6FB_03075) adk 586489..587067 (-) 579 WP_002855137.1 adenylate kinase -
  ACH6FB_RS03080 (ACH6FB_03080) aspS 587064..588815 (-) 1752 WP_002870092.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14158.69 Da        Isoelectric Point: 9.0848

>NTDB_id=952015 ACH6FB_RS03055 WP_002870088.1 583996..584379(+) (dprB) [Campylobacter jejuni strain YH030]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALEYGIANTRKKDGKLDSLAAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=952015 ACH6FB_RS03055 WP_002870088.1 583996..584379(+) (dprB) [Campylobacter jejuni strain YH030]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATCAAAAATTTACTTAAAATACATGAAATTTCTTTAC
TCATTGTAGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGTATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGAATACGGCATAGCCAATACACGCAA
GAAAGATGGTAAATTAGATTCTTTAGCTGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449