Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   WHP83_RS03385 Genome accession   NZ_CP148154
Coordinates   632264..633445 (+) Length   393 a.a.
NCBI ID   WP_338851158.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323HCJ0086     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 627264..638445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP83_RS03360 (WHP83_03360) ctsR 627825..628136 (+) 312 WP_002855438.1 hypothetical protein Machinery gene
  WHP83_RS03365 (WHP83_03365) ctsD 628114..629526 (+) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHP83_RS03370 (WHP83_03370) ctsP 629519..630127 (+) 609 WP_002851464.1 ATP-binding protein Machinery gene
  WHP83_RS03375 (WHP83_03375) ctsX 630131..630718 (+) 588 WP_002867245.1 hypothetical protein Machinery gene
  WHP83_RS03380 (WHP83_03380) ctsE 630708..632267 (+) 1560 WP_338851157.1 GspE/PulE family protein Machinery gene
  WHP83_RS03385 (WHP83_03385) ctsF 632264..633445 (+) 1182 WP_338851158.1 type II secretion system F family protein Machinery gene
  WHP83_RS03390 (WHP83_03390) - 633438..634202 (-) 765 WP_002855821.1 TSUP family transporter -
  WHP83_RS03395 (WHP83_03395) - 634206..634970 (-) 765 WP_002851318.1 TIGR02757 family protein -
  WHP83_RS03400 (WHP83_03400) flgK 634987..636813 (-) 1827 WP_002867248.1 flagellar hook-associated protein FlgK -
  WHP83_RS03405 (WHP83_03405) - 636823..637257 (-) 435 WP_002779263.1 flagellar protein FlgN -
  WHP83_RS03410 (WHP83_03410) flgM 637300..637497 (-) 198 WP_002779262.1 flagellar biosynthesis anti-sigma factor FlgM -
  WHP83_RS03415 (WHP83_03415) - 637560..637901 (-) 342 WP_002784057.1 hypothetical protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45694.30 Da        Isoelectric Point: 9.2540

>NTDB_id=951843 WHP83_RS03385 WP_338851158.1 632264..633445(+) (ctsF) [Campylobacter jejuni strain Z1323HCJ0086]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIKE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDSYGIFCIFLFVVFIVMLILAYKNFHSFAFSCDF
LFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLVFLEPMMTLFVAFLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=951843 WHP83_RS03385 WP_338851158.1 632264..633445(+) (ctsF) [Campylobacter jejuni strain Z1323HCJ0086]
ATGAAATTTTATGAAGTGGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
ATGAAAATTTCATACTCTTTTTTAAAGAGCTGGCTTTATTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAAAGAA
TTATATCTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGCTAGCTTTGATAAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTGAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATAGCTATGGAATTTTTTGCA
TATTTTTGTTTGTTGTTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAATACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTATTTTCTATGCTCAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTGTTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGTGAAAATTTAATGGATAGATTTTTGGTTTTTTTAGAGCCTATGATGACTTTATTTGTGGCGTTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

98.469

99.746

0.982