Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   WHP77_RS03370 Genome accession   NZ_CP148153
Coordinates   634236..635417 (+) Length   393 a.a.
NCBI ID   WP_002851165.1    Uniprot ID   Q7WYI5
Organism   Campylobacter jejuni strain Z1323PCJ0002     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 629236..640417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP77_RS03345 (WHP77_03345) ctsR 629797..630108 (+) 312 WP_015016496.1 hypothetical protein Machinery gene
  WHP77_RS03350 (WHP77_03350) ctsD 630086..631498 (+) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHP77_RS03355 (WHP77_03355) ctsP 631491..632099 (+) 609 WP_002851464.1 ATP-binding protein Machinery gene
  WHP77_RS03360 (WHP77_03360) ctsX 632103..632690 (+) 588 WP_265604827.1 transformation system protein Machinery gene
  WHP77_RS03365 (WHP77_03365) ctsE 632680..634239 (+) 1560 Protein_646 GspE/PulE family protein -
  WHP77_RS03370 (WHP77_03370) ctsF 634236..635417 (+) 1182 WP_002851165.1 type II secretion system F family protein Machinery gene
  WHP77_RS03375 (WHP77_03375) - 635410..636174 (-) 765 WP_002851426.1 TSUP family transporter -
  WHP77_RS03380 (WHP77_03380) - 636178..636942 (-) 765 WP_002851318.1 TIGR02757 family protein -
  WHP77_RS03385 (WHP77_03385) flgK 636959..638785 (-) 1827 WP_002851396.1 flagellar hook-associated protein FlgK -
  WHP77_RS03390 (WHP77_03390) - 638795..639229 (-) 435 WP_002779263.1 flagellar protein FlgN -
  WHP77_RS03395 (WHP77_03395) flgM 639272..639469 (-) 198 WP_002779262.1 flagellar biosynthesis anti-sigma factor FlgM -
  WHP77_RS03400 (WHP77_03400) - 639532..639873 (-) 342 WP_002851191.1 hypothetical protein -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45764.35 Da        Isoelectric Point: 9.0938

>NTDB_id=951814 WHP77_RS03370 WP_002851165.1 634236..635417(+) (ctsF) [Campylobacter jejuni strain Z1323PCJ0002]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYFMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=951814 WHP77_RS03370 WP_002851165.1 634236..635417(+) (ctsF) [Campylobacter jejuni strain Z1323PCJ0002]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAGG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATTTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGCGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTGTTTTCTATGCTTAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7WYI5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

99.235

99.746

0.99