Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   WHP77_RS03360 Genome accession   NZ_CP148153
Coordinates   632103..632690 (+) Length   195 a.a.
NCBI ID   WP_265604827.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323PCJ0002     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 627103..637690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP77_RS03345 (WHP77_03345) ctsR 629797..630108 (+) 312 WP_015016496.1 hypothetical protein Machinery gene
  WHP77_RS03350 (WHP77_03350) ctsD 630086..631498 (+) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHP77_RS03355 (WHP77_03355) ctsP 631491..632099 (+) 609 WP_002851464.1 ATP-binding protein Machinery gene
  WHP77_RS03360 (WHP77_03360) ctsX 632103..632690 (+) 588 WP_265604827.1 transformation system protein Machinery gene
  WHP77_RS03365 (WHP77_03365) ctsE 632680..634239 (+) 1560 Protein_646 GspE/PulE family protein -
  WHP77_RS03370 (WHP77_03370) ctsF 634236..635417 (+) 1182 WP_002851165.1 type II secretion system F family protein Machinery gene
  WHP77_RS03375 (WHP77_03375) - 635410..636174 (-) 765 WP_002851426.1 TSUP family transporter -
  WHP77_RS03380 (WHP77_03380) - 636178..636942 (-) 765 WP_002851318.1 TIGR02757 family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 23345.40 Da        Isoelectric Point: 9.8409

>NTDB_id=951813 WHP77_RS03360 WP_265604827.1 632103..632690(+) (ctsX) [Campylobacter jejuni strain Z1323PCJ0002]
MQERIKELELRYKYFLLKKYLKYLLLIILISVIAFCFFVLMQKYNKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISRE
KLYKEVEEVKAVQENTHISKIEIDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKTIFWALKANELDKQKQDSW
LIFAQAKRALGEEKEAQSALDAYINYYGLMELDGK

Nucleotide


Download         Length: 588 bp        

>NTDB_id=951813 WHP77_RS03360 WP_265604827.1 632103..632690(+) (ctsX) [Campylobacter jejuni strain Z1323PCJ0002]
ATGCAAGAAAGAATTAAAGAGCTTGAGCTTAGGTATAAATACTTTTTACTTAAAAAATATTTAAAATATTTATTATTAAT
TATTCTAATATCAGTAATAGCATTTTGTTTTTTTGTGCTAATGCAAAAATATAATAAGCAAAAAAATATTTATTTGCAGG
CTATTGAACATAAAAAGCATTTGGAGCAAAAGATTCTTCAAGCGCAAATTTTACAAGAAAAAAATAAGATTTCTAGGGAA
AAGTTATATAAAGAAGTAGAAGAAGTTAAAGCGGTGCAGGAAAATACACATATTAGCAAGATAGAAATTGATTCTAAAAT
TTTAAATATTTCTGATTTAAAAAAATCTTTTTATCAAAATCCAAGCTATGAAAAGGCATTAAATTTAGCTAAGAAGTATT
TTGATATTAAAGCTTATCAAAAGACAATATTTTGGGCTTTAAAAGCCAATGAACTTGACAAGCAAAAACAAGATTCTTGG
CTGATTTTTGCTCAGGCTAAAAGAGCTTTAGGTGAAGAAAAAGAAGCTCAAAGTGCTTTAGATGCTTATATAAATTATTA
TGGTTTAATGGAATTAGATGGAAAGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

99.487

100

0.995