Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   WHP77_RS03345 Genome accession   NZ_CP148153
Coordinates   629797..630108 (+) Length   103 a.a.
NCBI ID   WP_015016496.1    Uniprot ID   A0A3X8SVA4
Organism   Campylobacter jejuni strain Z1323PCJ0002     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 624797..635108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP77_RS03335 (WHP77_03335) - 625479..626120 (+) 642 WP_002851542.1 HAD family hydrolase -
  WHP77_RS03340 (WHP77_03340) nifJ 626213..629773 (+) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  WHP77_RS03345 (WHP77_03345) ctsR 629797..630108 (+) 312 WP_015016496.1 hypothetical protein Machinery gene
  WHP77_RS03350 (WHP77_03350) ctsD 630086..631498 (+) 1413 WP_002862130.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHP77_RS03355 (WHP77_03355) ctsP 631491..632099 (+) 609 WP_002851464.1 ATP-binding protein Machinery gene
  WHP77_RS03360 (WHP77_03360) ctsX 632103..632690 (+) 588 WP_265604827.1 transformation system protein Machinery gene
  WHP77_RS03365 (WHP77_03365) ctsE 632680..634239 (+) 1560 Protein_646 GspE/PulE family protein -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12457.35 Da        Isoelectric Point: 5.8722

>NTDB_id=951810 WHP77_RS03345 WP_015016496.1 629797..630108(+) (ctsR) [Campylobacter jejuni strain Z1323PCJ0002]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIILDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=951810 WHP77_RS03345 WP_015016496.1 629797..630108(+) (ctsR) [Campylobacter jejuni strain Z1323PCJ0002]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATACTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3X8SVA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99