Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   ACH6CW_RS09165 Genome accession   NZ_CP172306
Coordinates   1960116..1960445 (+) Length   109 a.a.
NCBI ID   WP_034070202.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain pat0103     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1955116..1965445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6CW_RS09150 - 1955731..1956693 (+) 963 WP_128696080.1 SDR family oxidoreductase -
  ACH6CW_RS09155 - 1956693..1957730 (+) 1038 WP_166740944.1 glycosyltransferase family 4 protein -
  ACH6CW_RS09160 - 1957928..1959925 (+) 1998 WP_196625091.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  ACH6CW_RS09165 comEA/comE1 1960116..1960445 (+) 330 WP_034070202.1 ComEA family DNA-binding protein Machinery gene
  ACH6CW_RS09175 - 1960662..1961858 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  ACH6CW_RS09180 uvrB 1962046..1964058 (+) 2013 WP_015502637.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11397.40 Da        Isoelectric Point: 8.0459

>NTDB_id=951507 ACH6CW_RS09165 WP_034070202.1 1960116..1960445(+) (comEA/comE1) [Pseudomonas aeruginosa strain pat0103]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAAMTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=951507 ACH6CW_RS09165 WP_034070202.1 1960116..1960445(+) (comEA/comE1) [Pseudomonas aeruginosa strain pat0103]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAACCCGCTGGCCGCAATGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385
  comEA Vibrio cholerae C6706

37.168

100

0.385
  comEA Vibrio cholerae strain A1552

37.168

100

0.385