Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   WHO18_RS17240 Genome accession   NZ_CP148128
Coordinates   3252393..3253037 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis isolate FELIX_MS620     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3247393..3258037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO18_RS17205 mrpB 3248585..3249016 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  WHO18_RS17210 mrpC 3249016..3249357 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  WHO18_RS17215 mrpD 3249350..3250831 (+) 1482 WP_003244432.1 Na+/H+ antiporter subunit D -
  WHO18_RS17220 mrpE 3250837..3251313 (+) 477 WP_003244015.1 Na+/H+ antiporter subunit E -
  WHO18_RS17225 mrpF 3251313..3251597 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  WHO18_RS17230 mnhG 3251581..3251955 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  WHO18_RS17235 yuxO 3251994..3252374 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  WHO18_RS17240 comA 3252393..3253037 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  WHO18_RS17245 comP 3253118..3255427 (-) 2310 WP_003242894.1 two-component system sensor histidine kinase ComP Regulator
  WHO18_RS17250 comX 3255442..3255609 (-) 168 WP_003242801.1 competence pheromone ComX Regulator
  WHO18_RS17255 comQ 3255597..3256496 (-) 900 WP_003243039.1 ComX modifying isoprenyl transferase ComQ Regulator
  WHO18_RS17260 degQ 3256681..3256821 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  WHO18_RS17265 - 3257043..3257168 (+) 126 WP_003228793.1 hypothetical protein -
  WHO18_RS17270 - 3257282..3257650 (+) 369 WP_003243784.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=951468 WHO18_RS17240 WP_003220716.1 3252393..3253037(-) (comA) [Bacillus subtilis isolate FELIX_MS620]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=951468 WHO18_RS17240 WP_003220716.1 3252393..3253037(-) (comA) [Bacillus subtilis isolate FELIX_MS620]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1