Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ACH19Q_RS02695 Genome accession   NZ_CP172236
Coordinates   584001..584501 (-) Length   166 a.a.
NCBI ID   WP_011002677.1    Uniprot ID   Q8XVQ9
Organism   Ralstonia pseudosolanacearum strain UMN24-1     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 579001..589501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH19Q_RS02675 (ACH19Q_02675) - 579534..580676 (+) 1143 WP_197368350.1 pectate lyase -
  ACH19Q_RS02680 (ACH19Q_02680) corA 580714..581676 (-) 963 WP_011002681.1 magnesium/cobalt transporter CorA -
  ACH19Q_RS02685 (ACH19Q_02685) pyrF 581896..582711 (+) 816 WP_028853640.1 orotidine-5'-phosphate decarboxylase -
  ACH19Q_RS02690 (ACH19Q_02690) - 582746..583974 (+) 1229 Protein_521 cation diffusion facilitator family transporter -
  ACH19Q_RS02695 (ACH19Q_02695) cinA 584001..584501 (-) 501 WP_011002677.1 CinA family protein Machinery gene
  ACH19Q_RS02700 (ACH19Q_02700) - 584527..585105 (-) 579 WP_019718243.1 phosphatidylglycerophosphatase A -
  ACH19Q_RS02705 (ACH19Q_02705) thiL 585102..586100 (-) 999 WP_011002675.1 thiamine-phosphate kinase -
  ACH19Q_RS02710 (ACH19Q_02710) - 586343..588688 (+) 2346 WP_197368490.1 NADP-dependent malic enzyme -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 17466.92 Da        Isoelectric Point: 6.9696

>NTDB_id=951433 ACH19Q_RS02695 WP_011002677.1 584001..584501(-) (cinA) [Ralstonia pseudosolanacearum strain UMN24-1]
MAESRALAQLAELVGDTLHKRSLMVATAESCTAGLVGAAITDIPGASAWFERGFVTYSNEAKSQMLGVPATLIREHGAVS
EPVAHAMAEGAVLNSRAQVALAVTGVAGPTGGTPDKPVGMVCFGWSNRLQTRVETRHFKGDRKQIRLQAAEHALRGLLDF
LDAAES

Nucleotide


Download         Length: 501 bp        

>NTDB_id=951433 ACH19Q_RS02695 WP_011002677.1 584001..584501(-) (cinA) [Ralstonia pseudosolanacearum strain UMN24-1]
ATGGCTGAATCCCGCGCGCTGGCGCAACTGGCCGAACTGGTGGGCGACACGCTGCACAAGCGCAGTCTGATGGTGGCGAC
GGCGGAATCGTGCACCGCCGGGCTCGTCGGCGCGGCCATCACCGACATCCCGGGCGCGTCCGCGTGGTTCGAGCGCGGCT
TCGTCACGTATTCGAACGAAGCGAAATCGCAGATGCTGGGCGTGCCGGCCACGCTGATCCGCGAGCATGGCGCGGTGAGC
GAGCCGGTGGCGCACGCCATGGCCGAAGGCGCCGTGCTCAACAGCCGCGCACAGGTGGCGCTGGCCGTGACGGGCGTGGC
GGGACCGACCGGCGGCACGCCCGACAAACCCGTCGGCATGGTGTGCTTCGGCTGGAGCAACCGCCTGCAGACGCGGGTGG
AAACCCGCCACTTCAAGGGCGACCGCAAGCAGATCCGGCTACAAGCCGCCGAGCACGCGCTGCGCGGCCTGCTGGACTTC
CTAGACGCCGCGGAAAGCTAG

Domains

Predicted by InterProScan.

Competence-damaged protein (CinA)

(9-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8XVQ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae R36A

40.816

88.554

0.361
  cinA Streptococcus pneumoniae Rx1

40.816

88.554

0.361
  cinA Streptococcus pneumoniae R6

40.816

88.554

0.361
  cinA Streptococcus pneumoniae D39

40.816

88.554

0.361